PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g33670.1
Common NameOs08g0433500, OsJ_27429
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 335aa    MW: 36651.4 Da    PI: 5.635
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g33670.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM151.24.8e-4771401127
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvka...eekewyfFskrdkkyatgkrknratksgyWka 85 
                       lp+GfrF Ptdeelv++yL++k+ + +++   +i++vd+y+++Pw+Lp      +  +   +  e+yfF++r++ky++g r +rat+ gyWk+
  LOC_Os08g33670.1   7 LPAGFRFFPTDEELVTYYLARKAMDATFTS-AAIRDVDLYTSDPWHLPCdssaaS--TgggGGGECYFFCRRSSKYPSGARVRRATAGGYWKS 96 
                       799************************999.78**************94355431..13334559**************************** PP

               NAM  86 tgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyr 127
                       tgkdk v+++  +g lvg+kktLvfy+grap+gekt+Wvmhey+
  LOC_Os08g33670.1  97 TGKDKGVYAAggGGGLVGTKKTLVFYEGRAPRGEKTSWVMHEYS 140
                       *********9877889***************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.06E-524174IPR003441NAC domain
PROSITE profilePS5100553.2297174IPR003441NAC domain
PfamPF023659.6E-268140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MEEEQRLPAG FRFFPTDEEL VTYYLARKAM DATFTSAAIR DVDLYTSDPW HLPCDSSAAS  60
TGGGGGGECY FFCRRSSKYP SGARVRRATA GGYWKSTGKD KGVYAAGGGG GLVGTKKTLV  120
FYEGRAPRGE KTSWVMHEYS RAPSTNFIRG AQARTHNLLD IIYSEWVICR VFKKQPPIEH  180
WLEMEEVETT TTTTTVQEHT PNRRRLPPAE AAAAPPPPSG QPWQHTSRRS GDGRAAIDGG  240
NREEEEDEHG LAREESSSPV VISSPSRCTS SPSSRLLNHE HLGASSSDDL PELMEFGDIY  300
GGIAAGGPTD QQASSSNSNS ICNFLDEPYY CWNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-40717520169NAC domain-containing protein 19
3swm_B1e-40717520169NAC domain-containing protein 19
3swm_C1e-40717520169NAC domain-containing protein 19
3swm_D1e-40717520169NAC domain-containing protein 19
3swp_A1e-40717520169NAC domain-containing protein 19
3swp_B1e-40717520169NAC domain-containing protein 19
3swp_C1e-40717520169NAC domain-containing protein 19
3swp_D1e-40717520169NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.856570.0callus| panicle| root
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasA3BTF2
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g33670.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g33670
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0046660.0AP004666.4 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0431A03.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650320.10.0NAC domain-containing protein 87 isoform X1
SwissprotQ9FLJ27e-54NC100_ARATH; NAC domain-containing protein 100
TrEMBLA3BTF20.0A3BTF2_ORYSJ; Os08g0433500 protein
STRINGORGLA08G0137900.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147652122
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.11e-42NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]