PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g38240.1
Common NameLOC4343653, OJ1019_E02.22, Os07g0569700, SAP16
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 291aa    MW: 31892.8 Da    PI: 8.2706
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g38240.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.84.4e-06262284223
                       EETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                       +Cp+C+k F+++ +L+ H  + H
  LOC_Os07g38240.1 262 VCPKCSKAFRDPVLLVEHVERdH 284
                       7*****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183101.83E-13459No hitNo description
Gene3DG3DSA:4.10.1110.102.7E-101053IPR000058Zinc finger, AN1-type
PROSITE profilePS510397.5031059IPR000058Zinc finger, AN1-type
SMARTSM001544.1E-41352IPR000058Zinc finger, AN1-type
PfamPF014285.6E-141351IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.102.5E-1091149IPR000058Zinc finger, AN1-type
SuperFamilySSF1183102.49E-993145No hitNo description
PROSITE profilePS510397.72898145IPR000058Zinc finger, AN1-type
SMARTSM001540.073101142IPR000058Zinc finger, AN1-type
PfamPF014283.5E-8101140IPR000058Zinc finger, AN1-type
SMARTSM003550.45224247IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280226247IPR007087Zinc finger, C2H2
SMARTSM003558261284IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.767261289IPR007087Zinc finger, C2H2
PROSITE patternPS000280263284IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009089anatomyendosperm
PO:0007042developmental stagewhole plant fruit formation stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MGTPEFPNLG KHCSVGDCNQ IDFLPFTCDR CDHVFCLQHR SYTSHQCPNA NQKDVTVLIC  60
PLCAKGVRLN PNEDPNITWD THVNSDCDPS NYQKVTKKKK CPVPGCRETL TFSNTIRCKD  120
CTKEHCLKHR FGPDHKCPGP RKPESTFPFG NMLRRSQKAE SCSNSNSSST SSSWWSSSLL  180
TAATSFKSSA EAGMQKLSTA TTQAIQKAKD GISTSSSNSG DLVEQCVQCP ARFSTVGALI  240
EHCEKSHQSN SQSSRSRVTV DVCPKCSKAF RDPVLLVEHV ERDHGGTSRA *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.97720.0callus| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ0D5B9
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Function -- GeneRIF ? help Back to Top
  1. Data show that overexpression of LOC_Os07g38240 (OsSAP16) led to global changes in gene expression consistent with the function of zinc-finger transcription factors.
    [PMID: 27303811]
  2. Loss of OsSAP16 function reduces germination while greater expression of OsSAP16 enhances germination at low temperature (LTG). In addition, accessions with extremely high and low LTG values have correspondingly high and low OsSAP16 expression at low temperatures, suggesting that variation in expression of the OsSAP16 gene contributes to LTG variation.
    [PMID: 29237030]
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g38240.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g38240
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8291290.0CT829129.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRN113H10, full insert sequence.
GenBankHQ3248180.0HQ324818.1 Oryza sativa Japonica Group clone KCS176H09 zinc finger AN1 and C2H2 domain-containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644892.10.0zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
SwissprotQ0D5B90.0SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBLB8B7I40.0B8B7I4_ORYSI; Uncharacterized protein
TrEMBLB9FY020.0B9FY02_ORYSJ; Zinc finger AN1 and C2H2 domain-containing protein
STRINGORGLA07G0246500.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47633342
Representative plantOGRP19091520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-114C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Vij S,Tyagi AK
    Genome-wide analysis of the stress associated protein (SAP) gene family containing A20/AN1 zinc-finger(s) in rice and their phylogenetic relationship with Arabidopsis.
    Mol. Genet. Genomics, 2006. 276(6): p. 565-75
    [PMID:17033811]
  3. Wang F, et al.
    Overexpression of OsSAP16 Regulates Photosynthesis and the Expression of a Broad Range of Stress Response Genes in Rice (Oryza sativa L.).
    PLoS ONE, 2016. 11(6): p. e0157244
    [PMID:27303811]
  4. Wang X, et al.
    Natural variation reveals that OsSAP16 controls low-temperature germination in rice.
    J. Exp. Bot., 2018. 69(3): p. 413-421
    [PMID:29237030]