PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g08530.1
Common NameLOC4342576, OJ1046_F10.104, OJ1506_G02.21, Os07g0183200
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 408aa    MW: 44621.8 Da    PI: 4.8478
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g08530.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.82e-13124226199
                       EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE..E-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk..ldg 86 
                       f+k+l+ sd   + r++ p   a+       + k  ++  l ++d++g  +++ +   +k++r++l+k Wk+F ++ +  +gD+v+F+  +d+
  LOC_Os07g08530.1 124 FVKTLMISDFDFRIRFSAPMADAKGVfpplvDAKAVQP--LLVKDLHGSPMTFDY--GRKGKRVTLAKVWKKFRDDMDFVDGDSVIFMrrRDD 212
                       899********************888**9986666676..999************..*******************************76667 PP

                       S.SEE..EEEEE-S CS
                B3  87 r.sefelvvkvfrk 99 
                       + +++el+v+v+r+
  LOC_Os07g08530.1 213 DdDDGELYVGVRRQ 226
                       7799*******997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.1E-13119233IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.7E-12119232IPR015300DNA-binding pseudobarrel domain
CDDcd100172.11E-8122206No hitNo description
SMARTSM010190.0027124227IPR003340B3 DNA binding domain
PROSITE profilePS508638.586124227IPR003340B3 DNA binding domain
PfamPF023622.3E-10124226IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000032anatomytetrad of microspores
PO:0001029developmental stageE tetrad stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MAAAAAPLAD DGDGIVDRDM WLACAAPNSG RLPAVGSVVF YFVDGHAAQF CQFPAPLLEQ  60
LAVPGPRVFL CTVAAVRLRA DALTNEAYAE ITLDPVADHD VPRLAPAPAP APAAAAGGQQ  120
LRYFVKTLMI SDFDFRIRFS APMADAKGVF PPLVDAKAVQ PLLVKDLHGS PMTFDYGRKG  180
KRVTLAKVWK KFRDDMDFVD GDSVIFMRRR DDDDDDGELY VGVRRQRTLE RPLRNTMRRY  240
RPPTPPQAAV QEAVLAAAGH AAAGERFTVA YRSRKDGDEF VVPREAVEEG LRARLTSLAE  300
VEFVWAVEDG APPIVGPRGK VTAIATGQLW RNLEIVWDGN SEMDMSANFW QVRPVEEVDI  360
SPSTPPPKRL KNCEIDDTAS TSVSVDNGDE QVPTMRQRLE ALIPDNI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A4e-2913381336Auxin response factor 1
4ldy_B4e-2913381336Auxin response factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.520710.0panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329746790.0
Expression AtlasQ8H507-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g08530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g08530
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0646610.0AK064661.1 Oryza sativa Japonica Group cDNA clone:002-115-A08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646443.10.0B3 domain-containing protein Os07g0183200
SwissprotQ8H5070.0Y7832_ORYSJ; B3 domain-containing protein Os07g0183200
TrEMBLA0A0E0Q4W70.0A0A0E0Q4W7_ORYRU; Uncharacterized protein
TrEMBLA2YIU30.0A2YIU3_ORYSI; Uncharacterized protein
STRINGOS07T0183200-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP157921114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.13e-29auxin response factor 19
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]