PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g04170.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family M-type_MADS
Protein Properties Length: 491aa    MW: 54434.6 Da    PI: 4.8618
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g04170.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF36.66e-12145180338
                       --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEE CS
            SRF-TF   3 ienksnrqvtfskRrngilKKAeELSvLCdaevavi 38 
                       ie+++ r+ t+skRr g++K A+ LS L+da va+ 
  LOC_Os07g04170.1 145 IEEDRDRSLTLSKRRDGLFKLANDLSLLTDASVAIC 180
                       99*******************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.0E-6134193IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-5137157IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.62E-13139204IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.456142179IPR002100Transcription factor, MADS-box
PfamPF003191.4E-11145182IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-5157172IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-5172193IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MEREFCGEME SQICQFGTFL EVNNQHSATP KGKTIPVKCT DCLPGVASRS LTVIPLEVPH  60
DVLLSAREAK TQYNSTFEHN LSETNFVTGT YNGAHHANVK DVPPDIYETE FRHQFPRIET  120
SFSIIGAHFL SSMVRRGRRK GVRYIEEDRD RSLTLSKRRD GLFKLANDLS LLTDASVAIC  180
LHDSNKAQFF GAPSVKPVVD AFVSEAEPFA DEQLKAKLTS MQSELVQLEN EEEEKDKKTE  240
ESIQRFKEAQ EESLGMGMAK HLFSRLEDLS HDDMRELLDV LLPLQQDFKK RLPPLRRGSK  300
LQIGGSSAWA HQQPSCSRFL ASHRPFTPLL PGGTSGVPMI PPPPVPGSPW SQIFPLRPPL  360
FPSPELVPSQ QLPPVSPPQN TVAPPPMHAP LVQQPLTNQS SAVPLLTQWQ MRFGDQPPAE  420
VQACTPVEQP QNDNAVHTPT FSDSFLLELL ADVSDDGIAT AEPLCSPPID DQFLADIDWL  480
AELDTIDGNL *
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g04170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g04170
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0037420.0AP003742.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1118_D07.
GenBankAP0043380.0AP004338.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0507H12.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882749.10.0uncharacterized protein LOC107277131
TrEMBLA0A0E0GK070.0A0A0E0GK07_ORYNI; Uncharacterized protein
TrEMBLA0A0E0Q3R00.0A0A0E0Q3R0_ORYRU; Uncharacterized protein
STRINGORUFI07G02010.10.0(Oryza rufipogon)
STRINGONIVA03G12000.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP155501117
Representative plantOGRP9531413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29962.18e-09AGAMOUS-like 64