PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os06g48950.1 | ||||||||
Common Name | ARF19, ARF7A, LOC4341978, OJ1215_E11.1, Os06g0702600, P0596H10.43 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ARF | ||||||||
Protein Properties | Length: 1139aa MW: 125973 Da PI: 6.6758 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 71.6 | 9.7e-23 | 121 | 222 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+lt sd++++g +++p++ ae++ + +++ ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F + LOC_Os06g48950.1 121 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QELQARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVIFV--R 209 99*****************************954.4444.49************************************************..5 PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 +++++l+++++r+ LOC_Os06g48950.1 210 DEKQQLLLGIRRA 222 688889****997 PP | |||||||
2 | Auxin_resp | 118 | 7.8e-39 | 247 | 330 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras++eFv++++k++ka++ +++s+GmRf+m+fete+ +rr++Gt++g+sdldpvrW+nS+Wr+L+ LOC_Os06g48950.1 247 AAHAAANNSPFTIFYNPRASPTEFVIPFAKYQKAVYgNQISLGMRFRMMFETEELGTRRYMGTITGISDLDPVRWKNSQWRNLQ 330 79**********************************9*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.27E-43 | 110 | 250 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-41 | 113 | 236 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.54E-19 | 120 | 212 | No hit | No description |
Pfam | PF02362 | 1.2E-20 | 121 | 222 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.6E-22 | 121 | 223 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.801 | 121 | 223 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.5E-33 | 247 | 330 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.7E-9 | 992 | 1079 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 26.938 | 994 | 1078 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 4.41E-7 | 1006 | 1073 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009066 | anatomy | anther | ||||
PO:0001004 | developmental stage | anther development stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 1139 aa Download sequence Send to blast |
MMKQAQQQPP PPPASSAATT TTAMAAAAAA AVVGSGCEGE KTKAPAINSE LWHACAGPLV 60 SLPPAGSLVV YFPQGHSEQA DPETDEVYAQ MTLQPVTSYG KEALQLSELA LKQARPQTEF 120 FCKTLTASDT STHGGFSVPR RAAEKIFPPL DFSMQPPAQE LQARDLHDNV WTFRHIYRGQ 180 PKRHLLTTGW SLFVSGKRLF AGDSVIFVRD EKQQLLLGIR RANRQPTNIS SSVLSSDSMH 240 IGILAAAAHA AANNSPFTIF YNPRASPTEF VIPFAKYQKA VYGNQISLGM RFRMMFETEE 300 LGTRRYMGTI TGISDLDPVR WKNSQWRNLQ VGWDESAAGE RRNRVSIWEI EPVAAPFFIC 360 PPPFFGAKRP RQLDDESSEM ENLLKRAMPW LGEEICIKDP QTQNTIMPGL SLVQWMNMNM 420 QQSSSFANTA MQSEYLRSLS NPNMQNLGAA DLSRQLCLQN QLLQQNNIQF NTPKLSQQMQ 480 PVNELAKAGI PLNQLGVSTK PQEQIHDASN LQRQQPSMNH MLPLSQAQTN LGQAQVLVQN 540 QMQQQHASST QGQQPATSQP LLLPQQQQQQ QQQQQQQQQQ QQQQKLLQQQ QQQLLLQQQQ 600 QLSKMPAQLS SLANQQFQLT DQQLQLQLLQ KLQQQQQSLL SQPAVTLAQL PLIQEQQKLL 660 LDMQQQLSNS QTLSQQQMMP QQSTKVPSQN TPLPLPVQQE PQQKLLQKQA MLADTSEAAV 720 PPTTSVNVIS TTGSPLMTTG ATHSVLTEEI PSCSTSPSTA NGNHLLQPIL GRNKHCSMIN 780 TEKVPQSAAP MSVPSSLEAV TATPRMMKDS PKLNHNVKQS VVASKLANAG TGSQNYVNNP 840 PPTDYLETAS SATSVWLSQN DGLLHQNFPM SNFNQPQMFK DAPPDAEIHA ANTSNNALFG 900 INGDGPLGFP IGLGTDDFLS NGIDAAKYEN HISTEIDNSY RIPKDAQQEI SSSMVSQSFG 960 ASDMAFNSID STINDGGFLN RSSWPPAAPL KRMRTFTKVY KRGAVGRSID MSQFSGYDEL 1020 KHALARMFSI EGQLEERQRI GWKLVYKDHE DDILLLGDDP WEEFVGCVKC IRILSPQEVQ 1080 QMSLEGCDLG NNIPPNQACS SSDGGNAWRA RCDQNSEAIL KISMMKSKVE DVRYWNTA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-148 | 42 | 351 | 46 | 388 | Auxin response factor 5 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.22271 | 0.0 | callus| flower| leaf| panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32988521 | 0.0 | ||||
Expression Atlas | Q0D9R7 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os06g48950.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os06g48950 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB071296 | 0.0 | AB071296.1 Oryza sativa OsARF7a mRNA for auxin response factor 7a, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015643493.1 | 0.0 | auxin response factor 19 | ||||
Swissprot | Q0D9R7 | 0.0 | ARFS_ORYSJ; Auxin response factor 19 | ||||
TrEMBL | A0A0E0Q2A6 | 0.0 | A0A0E0Q2A6_ORYRU; Auxin response factor | ||||
STRING | ORUFI06G28510.2 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1409 | 35 | 106 | Representative plant | OGRP4193 | 11 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | auxin response factor 19 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os06g48950.1 |
Entrez Gene | 4341978 |
Publications ? help Back to Top | |||
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