PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os06g45890.1 | ||||||||
Common Name | LOC4341803, Os06g0670300, OSNPB_060670300, P0485A07.2, P0686E06.38 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | G2-like | ||||||||
Protein Properties | Length: 257aa MW: 28507.6 Da PI: 6.6752 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 95.1 | 5.3e-30 | 18 | 71 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+e+H++Fveave LGG+++AtPk+il+lm+vkg++++h+kSHLQ+YR+ LOC_Os06g45890.1 18 PRMRWTEEMHRQFVEAVECLGGQDEATPKRILQLMGVKGVSISHIKSHLQMYRS 71 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.373 | 14 | 74 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-28 | 14 | 72 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-23 | 18 | 71 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 1.16E-16 | 18 | 71 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.9E-7 | 19 | 70 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MGGFERRGVR QYNRSEVPRM RWTEEMHRQF VEAVECLGGQ DEATPKRILQ LMGVKGVSIS 60 HIKSHLQMYR SGSSNSNHPV SLQKLTSATV NNISKREFVN SEDRCIYASG DRNTASSDKN 120 TYTILRCGRS SMPSIEEIFR NWEQTRGRLL PWNSNVITTE QATTRASRQT TNYSKPLKQL 180 TDCDLTLSIG QLWDDAAGSD ADGSSTISEE VAAPSRDEAF VSSADDHFAA AAAKKESNML 240 TTDLNLDLTI SSSWLS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 6e-17 | 19 | 72 | 3 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 6e-17 | 19 | 72 | 3 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 6e-17 | 19 | 72 | 3 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 6e-17 | 19 | 72 | 3 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.53136 | 0.0 | callus| flower| leaf| panicle| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 115469457 | 0.0 | ||||
Expression Atlas | Q653M8 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os06g45890.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os06g45890 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU406763 | 0.0 | CU406763.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C005B16, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641452.1 | 0.0 | probable transcription factor KAN3 | ||||
TrEMBL | A2YG18 | 0.0 | A2YG18_ORYSI; Uncharacterized protein | ||||
TrEMBL | Q653M8 | 0.0 | Q653M8_ORYSJ; Os06g0670300 protein | ||||
STRING | OS06T0670300-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5493 | 37 | 58 | Representative plant | OGRP285 | 15 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02060.1 | 1e-27 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os06g45890.1 |
Entrez Gene | 4341803 |