PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LOC_Os06g45140.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 231aa MW: 25235.2 Da PI: 8.7691 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 55.7 | 1e-17 | 134 | 187 | 3 | 56 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 e kr rr+ +NRe+ArrsR+RK+a++ eLe v++L++eN++L k+l e +++ LOC_Os06g45140.2 134 ETKRIRRMVSNRESARRSRRRKQAQLSELESQVEQLKGENSSLFKQLTESSQQF 187 68******************************************8888877765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 8.5E-18 | 132 | 196 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.519 | 134 | 188 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.9E-15 | 134 | 186 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 6.25E-13 | 136 | 187 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 9.3E-14 | 136 | 187 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 139 | 154 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 231 aa Download sequence Send to blast |
MMKKCPSELQ LEAFIREEAG AGDRKPGVLS PGDGARKSGL FSPGDGEMSV LDQSTLDGSG 60 GGHQLWWPES VRTPPRAAAA FSATADERTP ASISDDPKPT TSANHAPESD SDSDCDSLLE 120 AERSPRLRGT KSTETKRIRR MVSNRESARR SRRRKQAQLS ELESQVEQLK GENSSLFKQL 180 TESSQQFNTA VTDNRILKSD VEALRVKVIR NQTLLQPPII GAFNFSPLLR * |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 148 | 155 | RRSRRRKQ |
2 | 150 | 155 | SRRRKQ |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Os.1503 | 0.0 | callus| flower| leaf| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 32975959 | 0.0 |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in developing seeds at low levels from 5 to 20 days after flowering (DAF). {ECO:0000269|PubMed:11133985}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). May function as a negative regulator in cold and drought stress responses (PubMed:22189955). {ECO:0000269|PubMed:11133985, ECO:0000269|PubMed:22189955}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LOC_Os06g45140.2 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by cold stress in roots. {ECO:0000269|PubMed:22189955}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
RiceGE | Os06g45140 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB053474 | 0.0 | AB053474.1 Oryza sativa mRNA for RISBZ5, complete cds. | |||
GenBank | AK065941 | 0.0 | AK065941.1 Oryza sativa Japonica Group cDNA clone:J013049M10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015643805.1 | 1e-122 | bZIP transcription factor RISBZ5 | ||||
Swissprot | Q654B3 | 1e-123 | RSBZ5_ORYSJ; bZIP transcription factor RISBZ5 | ||||
TrEMBL | A0A0E0ACU9 | 1e-133 | A0A0E0ACU9_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM06G24950.1 | 1e-134 | (Oryza glumipatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G24800.1 | 2e-19 | basic leucine zipper 9 |
Link Out ? help Back to Top | |
---|---|
Phytozome | LOC_Os06g45140.2 |
Publications ? help Back to Top | |||
---|---|---|---|
|