PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g45140.1
Common NameLOC4341753, Os06g0662200, OsJ_22252, OSJNBb0065C04.12, OSNPB_060662200
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bZIP
Protein Properties Length: 296aa    MW: 31925.8 Da    PI: 7.2214
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g45140.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_155.21.5e-17134187356
                       XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 
                       e kr rr+ +NRe+ArrsR+RK+a++ eLe  v++L++eN++L k+l e +++ 
  LOC_Os06g45140.1 134 ETKRIRRMVSNRESARRSRRRKQAQLSELESQVEQLKGENSSLFKQLTESSQQF 187
                       68******************************************8888877765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003388.5E-18132196IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.519134188IPR004827Basic-leucine zipper domain
PfamPF001703.0E-15134186IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.2E-13136187No hitNo description
SuperFamilySSF579591.37E-12136187No hitNo description
PROSITE patternPS000360139154IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009072anatomyplant ovary
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MMKKCPSELQ LEAFIREEAG AGDRKPGVLS PGDGARKSGL FSPGDGEMSV LDQSTLDGSG  60
GGHQLWWPES VRTPPRAAAA FSATADERTP ASISDDPKPT TSANHAPESD SDSDCDSLLE  120
AERSPRLRGT KSTETKRIRR MVSNRESARR SRRRKQAQLS ELESQVEQLK GENSSLFKQL  180
TESSQQFNTA VTDNRILKSD VEALRVKVKM AEDMVARAAM SCGLGQLGLA PLLSSRKMCQ  240
ALDMLSLPRN DACGFKGLNL GRQVQNSPVQ SAASLESLDN RISSEVTSCS ADVWP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148155RRSRRRKQ
2150155SRRRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.15030.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329759590.0
Expression AtlasQ654B3-
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in developing seeds at low levels from 5 to 20 days after flowering (DAF). {ECO:0000269|PubMed:11133985}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). May function as a negative regulator in cold and drought stress responses (PubMed:22189955). {ECO:0000269|PubMed:11133985, ECO:0000269|PubMed:22189955}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g45140.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by cold stress in roots. {ECO:0000269|PubMed:22189955}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g45140
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0534740.0AB053474.1 Oryza sativa mRNA for RISBZ5, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643805.10.0bZIP transcription factor RISBZ5
SwissprotQ654B30.0RSBZ5_ORYSJ; bZIP transcription factor RISBZ5
TrEMBLA0A0E0Q1650.0A0A0E0Q165_ORYRU; Uncharacterized protein
TrEMBLB8B1080.0B8B108_ORYSI; Uncharacterized protein
STRINGORUFI06G25410.10.0(Oryza rufipogon)
STRINGOS06T0662200-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20953796
Representative plantOGRP69561017
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.13e-30basic leucine zipper 9
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Liu C,Wu Y,Wang X
    bZIP transcription factor OsbZIP52/RISBZ5: a potential negative regulator of cold and drought stress response in rice.
    Planta, 2012. 235(6): p. 1157-69
    [PMID:22189955]