PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g41100.1
Common NameLOC4341530, Os06g0614100, OsJ_21969, OSNPB_060614100, P0417G12.29, P0691E09.5
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bZIP
Protein Properties Length: 452aa    MW: 49272.9 Da    PI: 8.9879
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g41100.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_138.42.7e-12149177533
                       CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLee 33 
                       k  rr+++NReAAr+sR+RKka+i++Le+
  LOC_Os06g41100.1 149 KTLRRLAQNREAARKSRLRKKAYIQQLET 177
                       7789***********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.0E-9143189No hitNo description
SMARTSM003381.2E-5145217IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.565147176IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.5E-7149179No hitNo description
PfamPF001702.5E-9149177IPR004827Basic-leucine zipper domain
PROSITE patternPS000360152167IPR004827Basic-leucine zipper domain
PfamPF141441.2E-25226300IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MAYPSTSGMI QASSSLHGSI TRRNPEGYDM PSDLDQALLL YFDGQEQDKP STQEEPHKPL  60
NFVKETLNIF PSQPMDGEPT PTPKASMSAP PIAGFSRRSP APAAADGRPL TLGKTSKAAF  120
KKEGGSGSGG AMAASASSEL KGPKTPDPKT LRRLAQNREA ARKSRLRKKA YIQQLETGRI  180
RLAHLEQEIQ FTRAQGAFCG AGILSPDAAL FNLEYERWQE AHHQVISRLR AAVEEHRPDG  240
ELQPHVDEAM SHYGVLMAHK ARLVGADPLH LLSGLWKGAV EQCFLWIGGF RPSELIKVVV  300
RHVEPLTEQQ LAAVYSAQQA ARQEEDALDG GLQALLRSLS DVVSSSDAPS SSQQTPPVMY  360
HPSAAAAMAA ASFMGQYGSY SNLQLAMDKL ANLAIFLRQA DEERMRTLHA LRRMLTVRQA  420
ARCFVAVDDY FGRLRALALF WTTTRPHPAA G*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.501210.0stem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ69T21
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g41100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g41100
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1199090.0AK119909.1 Oryza sativa Japonica Group cDNA clone:002-183-A10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644001.10.0transcription factor TGAL8 isoform X2
SwissprotQ69T210.0TGAL8_ORYSJ; Transcription factor TGAL8
TrEMBLB8B4L80.0B8B4L8_ORYSI; Uncharacterized protein
STRINGOS06T0614100-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129722126
Representative plantOGRP1699633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.33e-94bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]