PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os06g40710.1 | ||||||||
Common Name | LOC4341499, Os06g0609500, OSNPB_060609500, P0490F09.5, P0556B08.32 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | G2-like | ||||||||
Protein Properties | Length: 330aa MW: 36001.9 Da PI: 5.6327 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 106 | 2.2e-33 | 47 | 101 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 ++rlrWt +LH+rFv+av+qLGG+++AtPk il++m+v+gLt++hvkSHLQkYRl LOC_Os06g40710.1 47 RQRLRWTDDLHDRFVDAVTQLGGPDRATPKGILRIMGVQGLTIYHVKSHLQKYRL 101 58****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.367 | 44 | 104 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-32 | 46 | 102 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.16E-17 | 46 | 101 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.3E-26 | 48 | 102 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.1E-8 | 49 | 100 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.1E-22 | 133 | 179 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009072 | anatomy | plant ovary | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MYEPKPFSSI VLAHNDPVSH NQQIERINNN VVSNSGGNSS NSNFAARQRL RWTDDLHDRF 60 VDAVTQLGGP DRATPKGILR IMGVQGLTIY HVKSHLQKYR LAKYIPDPTA DGAKSDKKDL 120 GDLLADIESS SGMEIGEALK LQMEVQKRLH EQLEVQRQLQ LRIEAQGRYL QKIIEEQQRL 180 SGVLGESGKL GALGPAPGEP YQDSNKTDPS TPVPTSESPI RDKAGSGLFK TISSHDDCRE 240 PLTPDSSCRA GSPLESPPRA SKRIRVSSDI DHRGNNEFPP PLKVPEPSSG SDFRQESSVL 300 LSSSAVHFDS LESLDADENV FTNGSGSDD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 8e-24 | 47 | 104 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 8e-24 | 47 | 104 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 8e-24 | 47 | 104 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 8e-24 | 47 | 104 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.7599 | 0.0 | callus| flower| panicle| vegetative meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32981754 | 0.0 | ||||
Expression Atlas | Q69V46 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os06g40710.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os06g40710 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK071731 | 0.0 | AK071731.1 Oryza sativa Japonica Group cDNA clone:J023114F03, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015644024.1 | 0.0 | myb family transcription factor PHL7 | ||||
Refseq | XP_015644025.1 | 0.0 | myb family transcription factor PHL7 | ||||
Refseq | XP_025881863.1 | 0.0 | myb family transcription factor PHL7 | ||||
Swissprot | Q9SJW0 | 1e-98 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | C0JA19 | 0.0 | C0JA19_ORYGL; MYB-CC type transfactor | ||||
TrEMBL | Q69V46 | 0.0 | Q69V46_ORYSJ; Os06g0609500 protein | ||||
STRING | OS06T0609500-01 | 0.0 | (Oryza sativa) | ||||
STRING | ORGLA06G0171400.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2220 | 38 | 96 | Representative plant | OGRP78 | 17 | 262 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 2e-83 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os06g40710.1 |
Entrez Gene | 4341499 |