PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g40710.1
Common NameLOC4341499, Os06g0609500, OSNPB_060609500, P0490F09.5, P0556B08.32
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family G2-like
Protein Properties Length: 330aa    MW: 36001.9 Da    PI: 5.6327
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g40710.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1062.2e-3347101155
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       ++rlrWt +LH+rFv+av+qLGG+++AtPk il++m+v+gLt++hvkSHLQkYRl
  LOC_Os06g40710.1  47 RQRLRWTDDLHDRFVDAVTQLGGPDRATPKGILRIMGVQGLTIYHVKSHLQKYRL 101
                       58****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.36744104IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.7E-3246102IPR009057Homeodomain-like
SuperFamilySSF466891.16E-1746101IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-2648102IPR006447Myb domain, plants
PfamPF002492.1E-849100IPR001005SANT/Myb domain
PfamPF143791.1E-22133179IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009072anatomyplant ovary
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MYEPKPFSSI VLAHNDPVSH NQQIERINNN VVSNSGGNSS NSNFAARQRL RWTDDLHDRF  60
VDAVTQLGGP DRATPKGILR IMGVQGLTIY HVKSHLQKYR LAKYIPDPTA DGAKSDKKDL  120
GDLLADIESS SGMEIGEALK LQMEVQKRLH EQLEVQRQLQ LRIEAQGRYL QKIIEEQQRL  180
SGVLGESGKL GALGPAPGEP YQDSNKTDPS TPVPTSESPI RDKAGSGLFK TISSHDDCRE  240
PLTPDSSCRA GSPLESPPRA SKRIRVSSDI DHRGNNEFPP PLKVPEPSSG SDFRQESSVL  300
LSSSAVHFDS LESLDADENV FTNGSGSDD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A8e-2447104158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B8e-2447104158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C8e-2447104158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D8e-2447104158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.75990.0callus| flower| panicle| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329817540.0
Expression AtlasQ69V46-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g40710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g40710
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0717310.0AK071731.1 Oryza sativa Japonica Group cDNA clone:J023114F03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644024.10.0myb family transcription factor PHL7
RefseqXP_015644025.10.0myb family transcription factor PHL7
RefseqXP_025881863.10.0myb family transcription factor PHL7
SwissprotQ9SJW01e-98PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLC0JA190.0C0JA19_ORYGL; MYB-CC type transfactor
TrEMBLQ69V460.0Q69V46_ORYSJ; Os06g0609500 protein
STRINGOS06T0609500-010.0(Oryza sativa)
STRINGORGLA06G0171400.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22203896
Representative plantOGRP7817262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.12e-83G2-like family protein