PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g36930.1
Common NameHSF17, HSFA6A, Os06g0565200, OsJ_020873, P0513E02.12
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family HSF
Protein Properties Length: 332aa    MW: 36103.3 Da    PI: 4.6358
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g36930.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind98.37.3e-31441362102
                       HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
      HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                       Fl k++e++ed++++ ++sw  +  nsfvv+d++ fa  +Lp +Fkh nf+SF+RQLn+YgF+kv+ ++         weF+++ F  g+++l
  LOC_Os06g36930.1  44 FLVKTFEMVEDPATDAVVSWGgAARNSFVVWDPHAFAAGLLPLHFKHANFSSFLRQLNTYGFRKVSADR---------WEFANEDFLGGQRHL 127
                       9********************9899******************************************99.........*************** PP

                       XXXXXXXXX CS
      HSF_DNA-bind  94 lekikrkks 102
                       l +i+r+++
  LOC_Os06g36930.1 128 LANIRRRRR 136
                       ******975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.5E-2940134IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.1E-5040134IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.4E-3241134IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.3E-164467IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.3E-2644134IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-168395IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434084108IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-1696108IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009072anatomyplant ovary
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MDYSTVKQEE VEVVVLDGEE EAAAAAAPVP LPAAMGVGAA VAPFLVKTFE MVEDPATDAV  60
VSWGGAARNS FVVWDPHAFA AGLLPLHFKH ANFSSFLRQL NTYGFRKVSA DRWEFANEDF  120
LGGQRHLLAN IRRRRRGAGT GSTTPRAVNC GGGGGEGEVE RLRRDKEALA RELARLRRQQ  180
QEARAQLLDM ERRVRGTERR QEQCTEFLAR ALRSPDVLDN IARRHAAAVE RKKRRMLAAA  240
ADDDGLTFEA LALAAAADTS HSTGGAVTTD MIWYELLGEE QAEIDIEVDQ LVASASAAAD  300
TASEAEPWEE MGEEEVQELV QQIDCLASPS S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-203513416129Heat shock factor protein 1
5d5v_B3e-203513416129Heat shock factor protein 1
5d5v_D3e-203513416129Heat shock factor protein 1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154685790.0
Expression AtlasQ5Z6A4-
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g36930.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g36930
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0054560.0AP005456.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0513E02.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881831.10.0putative heat stress transcription factor A-6a
RefseqXP_025881832.10.0putative heat stress transcription factor A-6a
RefseqXP_025881833.10.0putative heat stress transcription factor A-6a
SwissprotQ5Z6A40.0HFA6A_ORYSJ; Putative heat stress transcription factor A-6a
TrEMBLA2YE600.0A2YE60_ORYSI; Uncharacterized protein
STRINGOS06T0565200-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Representative plantOGRP1403244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51910.17e-47heat shock transcription factor A7A
Publications ? help Back to Top
  1. Baniwal SK, et al.
    Heat stress response in plants: a complex game with chaperones and more than twenty heat stress transcription factors.
    J. Biosci., 2004. 29(4): p. 471-87
    [PMID:15625403]
  2. Guo J, et al.
    Genome-wide analysis of heat shock transcription factor families in rice and Arabidopsis.
    J Genet Genomics, 2008. 35(2): p. 105-18
    [PMID:18407058]