PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g30860.1
Common NameWRKY31
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 347aa    MW: 36614.3 Da    PI: 4.2895
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g30860.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.13.3e-27177232357
                       -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--S CS
              WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHn 57 
                       D ++WrKYGqK++kgs++pr+YYrC+s+ +C ++k+ver++ dp+++  tY+g H 
  LOC_Os06g30860.1 177 DLWAWRKYGQKPIKGSPYPRGYYRCSSNkNCAARKQVERCRFDPSFLLLTYTGAHS 232
                       99*************************99**************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-27161232IPR003657WRKY domain
PROSITE profilePS5081127.554170237IPR003657WRKY domain
SuperFamilySSF1182902.22E-23170233IPR003657WRKY domain
SMARTSM007742.2E-31175236IPR003657WRKY domain
PfamPF031067.5E-22177232IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MDGDAWWYPG GGGGGGSNNW DLGAVVRFGC GGGRVSPAAA LLGEAWEYDD DPFSSFLAPP  60
MTAQQAALPA VWEEGDDGDA AWMAPLPGLQ TGGGWGDQAP MVVDELCGAL VVAPPPPPKQ  120
QEVLQVQQQP PPADNTQPTT YQQGSGGDGE STRAGGSRKK QTRKEVVRVA ASGPAPDLWA  180
WRKYGQKPIK GSPYPRGYYR CSSNKNCAAR KQVERCRFDP SFLLLTYTGA HSGHDVPLHR  240
NSLAGTTRHK PPPPPPLPSA ADKSPATAAE AATASQSPGL SPTTPLRASS MELHGEDDAE  300
AELQVEEDDM AIDDEDDDDV ADETISTVPW GTPISDAIIA ASYEWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-151772371674WRKY transcription factor 1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ6IEQ0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g30860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g30860
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039510.0AP003951.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OJ1288_C01.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881961.10.0WRKY transcription factor 22-like
TrEMBLQ6IEQ00.0Q6IEQ0_ORYSJ; WRKY transcription factor 31
STRINGORGLA06G0135400.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125622536
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.11e-36WRKY family protein
Publications ? help Back to Top
  1. Zhang ZL, et al.
    A rice WRKY gene encodes a transcriptional repressor of the gibberellin signaling pathway in aleurone cells.
    Plant Physiol., 2004. 134(4): p. 1500-13
    [PMID:15047897]