PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os06g23030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ZF-HD | ||||||||
Protein Properties | Length: 214aa MW: 21962.6 Da PI: 6.5753 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 50.2 | 6.2e-16 | 60 | 110 | 4 | 53 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFH 53 ++Y+eC kNhAaslGgh + + g e +++++l CaACgCH nFH LOC_Os06g23030.1 60 TVYQECPKNHAASLGGHGAGRLRGVHAVVGGEpTDPTSLMCAACGCHCNFH 110 78****************999999999888888****************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 4.9E-12 | 60 | 110 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 1.0E-8 | 60 | 110 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 14.696 | 62 | 113 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MKLSTFATAA GAAADRSRGG GGKHGVRAAS RVGATGGVVA GDMAELQLRR AQPAVGGGET 60 VYQECPKNHA ASLGGHGAGR LRGVHAVVGG EPTDPTSLMC AACGCHCNFH CWLLEGSPPP 120 PPPLALPAPP MPANVLHGQL HREEETPEVR LPGVDGDESD NNSDGSEYYD ERSVSPPSPP 180 HLPAPVVHQP YYPSAQHMLL SLGSSGQAQR LPL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.51160 | 0.0 | stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32971240 | 0.0 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os06g23030.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os06g23030 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK061222 | 0.0 | AK061222.1 Oryza sativa Japonica Group cDNA clone:006-210-F04, full insert sequence. | |||
GenBank | AP005449 | 0.0 | AP005449.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0427E01. | |||
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015610599.1 | 7e-29 | zinc-finger homeodomain protein 9 | ||||
Swissprot | Q6ER21 | 6e-30 | ZHD9_ORYSJ; Zinc-finger homeodomain protein 9 | ||||
TrEMBL | A0A0E0PXD7 | 1e-118 | A0A0E0PXD7_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI06G14430.1 | 1e-119 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP21657 | 5 | 5 | Representative plant | OGRP91 | 16 | 237 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69600.1 | 2e-10 | zinc finger homeodomain 1 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os06g23030.1 |