PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g12230.1
Common NameLOC4340553, Os06g0226700, OSNPB_060226700, P0425F05.5, P0690H04.29
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family TCP
Protein Properties Length: 388aa    MW: 38741.7 Da    PI: 9.1688
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g12230.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP133.61.8e-41532332137
               TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg..... 88 
                       ++k+++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++  + s +ss+s+ s++     
  LOC_Os06g12230.1  53 PPKRTSTKDRHTKVDGRGRRIRMPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSLSIPshlrl 145
                       789******************************************************************999989999999998888899999 PP

               TCP  89 .....................................kaaksaakskksqksaasalnlakesr..akarar.are.rtrekmriknkln 137
                                                            +  +s+ +   s +s +  l+++  s   + a a+ +r+ r++++m+++++ +
  LOC_Os06g12230.1 146 aglagprfgggaraadawdrvvglgfggaadapssatS--SSSSPLLLSFHSGSVGLDVSPPSAstSPAAADlSRKrRWEQEMQQQQQYQ 233
                       9999999999999999**********999999986422..33335555566666556666644422333333566668888888887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.3E-4457233IPR005333Transcription factor, TCP
PROSITE profilePS5136927.67559113IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0008283Biological Processcell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0010229Biological Processinflorescence development
GO:0010252Biological Processauxin homeostasis
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0042023Biological ProcessDNA endoreduplication
GO:0048467Biological Processgynoecium development
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009047anatomystem
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MDVTGDGGGG GQRPNFPLQL LGKKEEQTCS TSQTAGAGGG GVVGANGSAA AAPPKRTSTK  60
DRHTKVDGRG RRIRMPAICA ARVFQLTREL GHKTDGETIE WLLQQAEPAV IAATGTGTIP  120
ANFTSLNISL RSSGSSLSIP SHLRLAGLAG PRFGGGARAA DAWDRVVGLG FGGAADAPSS  180
ATSSSSSPLL LSFHSGSVGL DVSPPSASTS PAAADLSRKR RWEQEMQQQQ QYQQQMAGYT  240
QSQIPAGTVW MVPSSNAQAA GGGAPPGGGG ESIWTFPQSG SGGGGGAATV YRGVPSGLHF  300
MNFPATPMAL LPGGQQLGLA GAGGGGEGHP GILAALNAYR AQAAQPDAGA AAQNGAQGSS  360
QHRQHQHHGG GGGGGDERHE SMSASDS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.495010.0callus| leaf| panicle| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329742580.0
Expression AtlasQ67WL3-
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00224DAPTransfer from AT1G69690Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g12230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g12230
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0642400.0AK064240.1 Oryza sativa Japonica Group cDNA clone:002-105-B01, full insert sequence.
GenBankAP0035130.0AP003513.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0690H04.
GenBankAP0035690.0AP003569.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0425F05.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641757.10.0transcription factor TCP15
TrEMBLA0A0E0PVC80.0A0A0E0PVC8_ORYRU; Uncharacterized protein
TrEMBLA2YAX00.0A2YAX0_ORYSI; Uncharacterized protein
TrEMBLQ67WL30.0Q67WL3_ORYSJ; Os06g0226700 protein
STRINGORUFI06G08380.10.0(Oryza rufipogon)
STRINGOS06T0226700-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37443479
Representative plantOGRP26991230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.11e-45TCP family protein