PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os06g01890.1 | ||||||||
Common Name | LOC107276241, Os06g0108500, OSNPB_060108500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 214aa MW: 24258.7 Da PI: 10.0177 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87.1 | 9.5e-28 | 19 | 68 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rie++++rqvtfskRr+g+lKKA+ELSvLCdaeva+++fs++g+++ ++s LOC_Os06g01890.1 19 RIEDTTRRQVTFSKRRKGLLKKASELSVLCDAEVALLVFSPRGRFFHFAS 68 8*********************************************9986 PP | |||||||
2 | K-box | 59.1 | 1.9e-20 | 90 | 177 | 9 | 96 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 ++ ++ +++ +++ L ei++ + R+++Ge+Les+sl+eL+ Le q+eksl++iR +K++ l+++i++lq++ek l+een L LOC_Os06g01890.1 90 KKPRELTNMKSQSETLAMEIDTVEAYTRKMQGENLESCSLQELHGLEMQMEKSLSSIRLQKQKKLMDKISQLQQQEKILSEENALLLD 177 45567889***************************************************************************98865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 27.095 | 10 | 70 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-24 | 12 | 32 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 12 | 66 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.6E-31 | 12 | 69 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.57E-27 | 13 | 92 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.0E-25 | 19 | 66 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 7.48E-32 | 20 | 79 | No hit | No description |
PRINTS | PR00404 | 1.4E-24 | 32 | 47 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-24 | 47 | 68 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 4.1E-20 | 94 | 177 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 12.238 | 95 | 187 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MAAAGGQQRR RGGRREMRRI EDTTRRQVTF SKRRKGLLKK ASELSVLCDA EVALLVFSPR 60 GRFFHFASAP SLEGTIDRYI SHTQEAPANK KPRELTNMKS QSETLAMEID TVEAYTRKMQ 120 GENLESCSLQ ELHGLEMQME KSLSSIRLQK QKKLMDKISQ LQQQEKILSE ENALLLDQGK 180 VQHAPIGAPA REMNQNQHVQ DIDVDTELVI GRR* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.74851 | 0.0 | leaf |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 116014006 | 0.0 | ||||
Expression Atlas | A0A0P0WS55 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os06g01890.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os06g01890 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK241055 | 0.0 | AK241055.1 Oryza sativa Japonica Group cDNA, clone: J065063N18, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015642542.1 | 1e-156 | MADS-box transcription factor 50-like isoform X2 | ||||
Swissprot | A2Z9Q7 | 5e-55 | MAD56_ORYSI; MADS-box transcription factor 56 | ||||
TrEMBL | A0A0P0WS55 | 1e-155 | A0A0P0WS55_ORYSJ; Os06g0108500 protein | ||||
TrEMBL | I1PYU0 | 1e-155 | I1PYU0_ORYGL; Uncharacterized protein | ||||
STRING | OS06T0108500-01 | 1e-155 | (Oryza sativa) | ||||
STRING | ORGLA06G0005200.1 | 1e-155 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP17434 | 10 | 10 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45660.1 | 2e-45 | AGAMOUS-like 20 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os06g01890.1 |
Entrez Gene | 107276241 |