PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os05g43920.1 | ||||||||
Common Name | ARF14, LOC4339313, Os05g0515400, P0022D06.14 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ARF | ||||||||
Protein Properties | Length: 700aa MW: 75519.8 Da PI: 6.8669 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 68.4 | 1e-21 | 133 | 246 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT..................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk 75 f+k+lt sd++++g +++p++ ae++ + + s++l+ d++g +W++++iyr++++r++lt GW++Fv+ ++L LOC_Os05g43920.1 133 FCKTLTASDTSTHGGFSVPRRAAEDCfpplvihlkeklvtfndyKTVR-PSQELIAVDLHGTQWKFRHIYRGQPRRHLLTIGWSSFVNRKKLV 224 99******************************8888888887653332.5579**************************************** PP TT-EEEEEE-SSSEE..EEEEE-S CS B3 76 egDfvvFkldgrsefelvvkvfrk 99 +gD v+F + ++++l+++v+r+ LOC_Os05g43920.1 225 SGDAVLFL--RGDDGQLRLGVRRA 246 ********..34888899999986 PP | |||||||
2 | Auxin_resp | 106 | 4.2e-35 | 271 | 351 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +a+++++ksvF++++nPr+++seF+v++++++k+l++++s+GmRf++ +e+ed++er+ +G+++g+s++dp+rWp+S+W++L LOC_Os05g43920.1 271 VASSLENKSVFHICFNPRSGASEFIVPYWRLLKSLNHPFSIGMRFRVCYESEDANERS-AGLISGISEVDPIRWPGSRWKCL 351 578899***************************************************9.9*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.92E-37 | 122 | 283 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 9.8E-35 | 128 | 248 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.17E-19 | 131 | 245 | No hit | No description |
PROSITE profile | PS50863 | 11.561 | 133 | 247 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-19 | 133 | 246 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.8E-21 | 133 | 247 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.0E-27 | 272 | 351 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 700 aa Download sequence Send to blast |
MGIDLNTVEE EAEEGAAAAV CGELWHACAG PGVALPRRGS ALVYLPQAHL AADGGGGEVP 60 PAGAAAVPPH VACRVVGVEL RADAATDEVY ARLALVAEGE MLQRNFREGG GEDGAGEMEG 120 CDAEKKPRMP HMFCKTLTAS DTSTHGGFSV PRRAAEDCFP PLVIHLKEKL VTFNDYKTVR 180 PSQELIAVDL HGTQWKFRHI YRGQPRRHLL TIGWSSFVNR KKLVSGDAVL FLRGDDGQLR 240 LGVRRAVQLR NEALFEPVNS SDSKLRILSS VASSLENKSV FHICFNPRSG ASEFIVPYWR 300 LLKSLNHPFS IGMRFRVCYE SEDANERSAG LISGISEVDP IRWPGSRWKC LLVRWDDSTD 360 SSHQNRVSPW EIERVGGSVS VTHSLSSGSK RTKLHFPQGS LDTPFLNGNG HPDSMGTENF 420 HRVLQGQEFR GSRSHGVVCS ESPGVPNFQS PDNRRFSADM RGYMMPASGP PQRNTEFTYQ 480 PIGFSESLGF PEVLQGQEMS QVVPLFRGAT FGARTQNDRV VSANSVHRSA AQSGLLASTL 540 GHPISQFTLS SSKVSSPSSV LMFNQATAPN HETVSGTNNK GMHVSQFASQ EMLSETVTWP 600 GTQRQTPSEI TSNQFALARI PAPPSGAESG LPKRDAGRSS CRLFGFSLTG NMLGEDGEGL 660 DDGAIEAGCE NPPVLELFGH SHSTPGALHA LCAAAPLGM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldy_A | 1e-90 | 19 | 373 | 18 | 353 | Auxin response factor 1 |
4ldy_B | 1e-90 | 19 | 373 | 18 | 353 | Auxin response factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.50772 | 0.0 | callus| leaf| panicle| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32977945 | 0.0 | ||||
Expression Atlas | Q0DGS1 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os05g43920.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os05g43920 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK067927 | 0.0 | AK067927.1 Oryza sativa Japonica Group cDNA clone:J013127F13, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015637659.1 | 0.0 | auxin response factor 14 | ||||
Swissprot | Q0DGS1 | 0.0 | ARFN_ORYSJ; Auxin response factor 14 | ||||
TrEMBL | A0A0E0PPY2 | 0.0 | A0A0E0PPY2_ORYRU; Auxin response factor | ||||
STRING | ORUFI05G24090.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5113 | 27 | 56 | Representative plant | OGRP14254 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33860.1 | 1e-137 | ARF family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os05g43920.1 |
Entrez Gene | 4339313 |
Publications ? help Back to Top | |||
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