PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os05g37190.1 | ||||||||
Common Name | LOC4338934, Os05g0444200, OsJ_18716, OSJNBa0020H14.18, OSNPB_050444200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C2H2 | ||||||||
Protein Properties | Length: 390aa MW: 42053.9 Da PI: 6.5621 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18 | 7.9e-06 | 211 | 230 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C+k F+r n++ H+ LOC_Os05g37190.1 211 FVCHVCNKAFNRYNNMQMHM 230 89*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.35E-5 | 207 | 234 | No hit | No description |
PROSITE profile | PS50157 | 10.388 | 211 | 238 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.1E-5 | 211 | 230 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 213 | 233 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50868 | 8.135 | 256 | 272 | IPR003616 | Post-SET domain |
SuperFamily | SSF57667 | 6.88E-5 | 282 | 318 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 7.1E-4 | 285 | 318 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 390 aa Download sequence Send to blast |
MVLRACTMVE GSSFVVGGGG GVPFFEWLKP RSSPPPSPSS SSTTTTSSSL TAQRQPRGAG 60 TMLCLPLLGR LGEEPVDADD GGAMNNPPVK EEVSNTTDDY AGVDLNIGLP ATTGGGSSED 120 APMDEDEEDD DDDEEEETED DEEKAAGLEG CKVEEKEREQ VHSEGSKYYV SVGGGEDQSS 180 NAGDVDAGAA CRGRRYWIPT PAQILIGPVQ FVCHVCNKAF NRYNNMQMHM WGHGREYRKG 240 PESLKGTQAT ATLAMLKLPC YCCAAGCRNN VGHPRARPLK DFRTLQTHYK RKHGAKPFAC 300 RRCAKPFAVK GDWRTHEKNC GKRWFCACGS DFKHKRSLND HVRSFGGGHF PVAAAAAAAH 360 AAAAPPKQQQ RIIRFDDAMA QMHGGGLMN* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.54232 | 0.0 | callus| leaf |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32987867 | 0.0 | ||||
Expression Atlas | Q6F2N5 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os05g37190.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os05g37190 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK102658 | 0.0 | AK102658.1 Oryza sativa Japonica Group cDNA clone:J033101H19, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015640742.1 | 0.0 | protein TRANSPARENT TESTA 1 isoform X1 | ||||
TrEMBL | A0A482G4B5 | 0.0 | A0A482G4B5_ORYSA; Latent opposer of DREB1 | ||||
TrEMBL | Q6F2N5 | 0.0 | Q6F2N5_ORYSJ; Os05g0444200 protein | ||||
STRING | OS05T0444200-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4472 | 36 | 67 | Representative plant | OGRP410 | 15 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51220.1 | 3e-95 | WIP domain protein 5 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os05g37190.1 |
Entrez Gene | 4338934 |