PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g28350.1
Common NameABI4, ERF117, Os05g0351200, OSJNBa0077J17.14
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 270aa    MW: 27626.8 Da    PI: 7.8566
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g28350.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.5e-194998255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      +y+GVr+++ +g+WvAeIr+p++   r r +lg+f tae+Aa+a+++a++ l+g
  LOC_Os05g28350.1 49 RYRGVRQRS-WGKWVAEIREPRK---RSRKWLGTFATAEDAARAYDRAALLLYG 98
                      59****999.**********954...5**********************98877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.1E-3649112IPR001471AP2/ERF domain
PROSITE profilePS5103222.37949106IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-2949105IPR001471AP2/ERF domain
PfamPF008471.2E-124997IPR001471AP2/ERF domain
CDDcd000185.32E-1749104No hitNo description
SuperFamilySSF541717.19E-2149106IPR016177DNA-binding domain
PRINTSPR003672.4E-105061IPR001471AP2/ERF domain
PRINTSPR003672.4E-107288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006970Biological Processresponse to osmotic stress
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009744Biological Processresponse to sucrose
GO:0009749Biological Processresponse to glucose
GO:0010119Biological Processregulation of stomatal movement
GO:0010353Biological Processresponse to trehalose
GO:0010449Biological Processroot meristem growth
GO:0010896Biological Processregulation of triglyceride catabolic process
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0032880Biological Processregulation of protein localization
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048316Biological Processseed development
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009009anatomyplant embryo
PO:0001081developmental stagemature plant embryo stage
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MEPSDDACTV AAPAAETAAS SSGAGGGGGG GRTKKKAAGK GGPENGKFRY RGVRQRSWGK  60
WVAEIREPRK RSRKWLGTFA TAEDAARAYD RAALLLYGPR AHLNLTAPPP LPPPPPSSAA  120
AAAASSSSAA SSTSAPPLRP LLPRPPHLHP AFHHQPFHHH LLQPQPPPPP PPLYYAATAS  180
TSTVTTTTTA PPPQLAAAAP AAVLVAAAVS STAETQAVVA TAPEDAASAA AAAAAEEEAA  240
WGFHGGDEED YAAALLWSEP DPWFDLFLK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1650105662ATERF1
3gcc_A2e-1650105662ATERF1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasC7J2Z1
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription regulator that binds to cis-responsive elements of genes involved in stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00674SELEXTransfer from GRMZM2G093595Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g28350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g28350
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1362210.0AC136221.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0077J17, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881609.10.0ethylene-responsive transcription factor ABI4
SwissprotC7J2Z10.0ABI4_ORYSJ; Ethylene-responsive transcription factor ABI4
TrEMBLA0A0E0HD511e-72A0A0E0HD51_ORYNI; Uncharacterized protein
STRINGOS05T0351200-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133032632
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40220.11e-18ERF family protein
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  2. Matsukura S, et al.
    Comprehensive analysis of rice DREB2-type genes that encode transcription factors involved in the expression of abiotic stress-responsive genes.
    Mol. Genet. Genomics, 2010. 283(2): p. 185-96
    [PMID:20049613]