PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g09020.1
Common NameOs05g0183100, OSNPB_050183100
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 195aa    MW: 21400.7 Da    PI: 6.269
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g09020.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.63.5e-3095153159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDg++WrKYG+K vk+s++pr+YYrC+++gC+vkk+ver++ed ++v++tY g Hnh 
  LOC_Os05g09020.1  95 LDDGFKWRKYGKKAVKNSPNPRNYYRCSTEGCNVKKRVERDREDHRYVITTYDGVHNHA 153
                       59********************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-3283155IPR003657WRKY domain
SuperFamilySSF1182901.7E-2787155IPR003657WRKY domain
PROSITE profilePS5081131.42290155IPR003657WRKY domain
SMARTSM007742.5E-3495154IPR003657WRKY domain
PfamPF031062.9E-2396152IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009038anatomypalea
PO:0001048developmental stagepalea development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MAASVGLNPE AFFFSNSYSY SSSPFMASYT PEFSAAAIDA NLFSGELDFD CSLPAPAQEY  60
PENENTMMRY ESEEKMRARV NGRIGFRTRS EVEILDDGFK WRKYGKKAVK NSPNPRNYYR  120
CSTEGCNVKK RVERDREDHR YVITTYDGVH NHASPAAAAA ALQYAAAAGD YYSPPLSSAG  180
SPPAAYSAGG SLLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-2781156378Probable WRKY transcription factor 4
2lex_A9e-2781156378Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.196211e-133leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1166329971e-133
Expression AtlasA0A0P0WIN4-
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00531DAPTransfer from AT5G26170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g09020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g09020
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8328020.0CT832802.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN033C24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638018.11e-142probable WRKY transcription factor 50
TrEMBLA0A0E0PIC81e-140A0A0E0PIC8_ORYRU; Uncharacterized protein
TrEMBLA0A0P0WIN41e-140A0A0P0WIN4_ORYSJ; Os05g0183100 protein (Fragment)
TrEMBLQ65WY51e-140Q65WY5_ORYSJ; Os05g0183100 protein
TrEMBLQ6IEL41e-140Q6IEL4_ORYSI; WRKY transcription factor 67
STRINGORUFI05G05890.11e-141(Oryza rufipogon)
STRINGOS05T0183100-011e-141(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.12e-39WRKY DNA-binding protein 50