PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g07010.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 294aa    MW: 32320.2 Da    PI: 8.8383
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g07010.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.84.5e-122567145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                      r rW++eE+e+++da  ++G + Wk+I + +  ++t+ q+ +r+ 
  LOC_Os05g07010.1 25 RERWSAEEHERFLDALILFGRD-WKRIEAFVA-TKTAIQVGHRLI 67
                      78******************77.*********.*******99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.21E-101364IPR009057Homeodomain-like
PROSITE profilePS5129413.2252074IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.5E-62465IPR009057Homeodomain-like
TIGRFAMsTIGR015575.0E-82462IPR006447Myb domain, plants
SMARTSM007174.8E-62472IPR001005SANT/Myb domain
PfamPF002491.1E-82567IPR001005SANT/Myb domain
CDDcd001672.20E-62765No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MAAMAAAAAG TKKKARKPYT ITRPRERWSA EEHERFLDAL ILFGRDWKRI EAFVATKTAI  60
QVGHRLIDLS LCKIINGGFR IQDRVRFLDF FFHFCLQALI DLPWSIIQIR SHAQKHFLKA  120
RKFGLAGGLP PPLHPRRATL LRANAAAADM MPPPWLPSAG GGSIGCSAPP SGVQQSMAGR  180
SPACYSTDEA SFRPLIHSND NDCSFIETPS CIGSGGESWI GDDAFFMQDE TIRLPISPDD  240
LGFAQVYKFV GDMFGSGERR PVEAHLRRLQ GMDPAISETI LLVLKNLEAN LSA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.707040.0leaf| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2977237360.0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g07010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g07010
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1241440.0AC124144.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0099P06, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638954.11e-166protein REVEILLE 8
TrEMBLI1PSQ70.0I1PSQ7_ORYGL; Uncharacterized protein
STRINGORGLA05G0040500.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36423170
Representative plantOGRP12551549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09600.26e-19MYB_related family protein