PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g49150.1
Common NameLOC4336762, MADS17, Os04g0580700, OSNPB_040580700
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MIKC_MADS
Protein Properties Length: 255aa    MW: 28802.6 Da    PI: 8.9745
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g49150.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF100.18.7e-321463150
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                      krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifss+gklye+ 
  LOC_Os04g49150.1 14 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFG 63
                      79**********************************************95 PP
2K-box1033.8e-3484178599
             K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                       s+++l+  +++s++qe+++Lk ++e Lqr+qRh+lGedL++Ls+keLqqLe+qLe sl++ R++K+++++eq+++l++ke++l e nk+L++k
  LOC_Os04g49150.1  84 SNSALAGGEHQSWYQEMSRLKTKLECLQRSQRHMLGEDLGPLSIKELQQLEKQLEYSLSQARQRKTQIMMEQVDDLRRKERQLGELNKQLKNK 176
                       334488899************************************************************************************ PP

             K-box  98 le 99 
                       le
  LOC_Os04g49150.1 177 LE 178
                       97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.571666IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-41665IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-32781IPR002100Transcription factor, MADS-box
CDDcd002651.04E-43782No hitNo description
PROSITE patternPS003500862IPR002100Transcription factor, MADS-box
PRINTSPR004047.6E-33828IPR002100Transcription factor, MADS-box
PfamPF003193.1E-271562IPR002100Transcription factor, MADS-box
PRINTSPR004047.6E-332843IPR002100Transcription factor, MADS-box
PRINTSPR004047.6E-334364IPR002100Transcription factor, MADS-box
PfamPF014866.1E-3192177IPR002487Transcription factor, K-box
PROSITE profilePS5129717.61393183IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009037anatomylemma
PO:0001047developmental stagelemma development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MDRSEMGRGR VELKRIENKI NRQVTFSKRR NGLLKKAYEL SVLCDAEVAL IIFSSRGKLY  60
EFGSAGINKT LEKYNSCCYN AQGSNSALAG GEHQSWYQEM SRLKTKLECL QRSQRHMLGE  120
DLGPLSIKEL QQLEKQLEYS LSQARQRKTQ IMMEQVDDLR RKERQLGELN KQLKNKLEAE  180
ADSSNCRSAI QDSWVHGTVV SGGRVLNAQP PPDIDCEPTL QIGYYQFVRP EAANPRSNGG  240
GGDQNNNFVM GWPL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-22674169MEF2C
5f28_B3e-22674169MEF2C
5f28_C3e-22674169MEF2C
5f28_D3e-22674169MEF2C
6byy_A3e-22675170MEF2 CHIMERA
6byy_B3e-22675170MEF2 CHIMERA
6byy_C3e-22675170MEF2 CHIMERA
6byy_D3e-22675170MEF2 CHIMERA
6bz1_A3e-22675170MEF2 CHIMERA
6bz1_B3e-22675170MEF2 CHIMERA
6bz1_C3e-22675170MEF2 CHIMERA
6bz1_D3e-22675170MEF2 CHIMERA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.23520.0flower| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO453859570.0
Expression AtlasQ0JAS4-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the floral meristem, lodicule, palea, lemma, receptacle, empty glume, stamen, pistil, and ovule. {ECO:0000269|PubMed:19820190}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Plays minor but redundant roles with MADS6 in floral development. {ECO:0000269|PubMed:19820190}.
Function -- GeneRIF ? help Back to Top
  1. Data indicate that MADS17 has a minor but redundant function with that of MFO1.
    [PMID: 19820190]
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g49150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g49150
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0705400.0AK070540.1 Oryza sativa Japonica Group cDNA clone:J023057B01, full insert sequence.
GenBankAY5519180.0AY551918.1 Oryza sativa (japonica cultivar-group) MADS-box protein RMADS213 mRNA, complete cds.
GenBankFJ6685960.0FJ668596.1 Oryza sativa Japonica Group MADS17 (MADS17) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634419.10.0MADS-box transcription factor 17-like
SwissprotQ7XUN20.0MAD17_ORYSJ; MADS-box transcription factor 17
TrEMBLA0A0D3FZB80.0A0A0D3FZB8_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9ZPN60.0A0A0D9ZPN6_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0H5180.0A0A0E0H518_ORYNI; Uncharacterized protein
TrEMBLA0A0E0PD480.0A0A0E0PD48_ORYRU; Uncharacterized protein
TrEMBLQ0JAS40.0Q0JAS4_ORYSJ; MADS17
STRINGOGLUM04G22680.10.0(Oryza glumipatula)
STRINGORUFI04G24470.10.0(Oryza rufipogon)
STRINGOS04T0580700-010.0(Oryza sativa)
STRINGOBART04G22790.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41873566
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.17e-92AGAMOUS-like 6
Publications ? help Back to Top
  1. Ohmori S, et al.
    MOSAIC FLORAL ORGANS1, an AGL6-like MADS box gene, regulates floral organ identity and meristem fate in rice.
    Plant Cell, 2009. 21(10): p. 3008-25
    [PMID:19820190]
  2. Duan Y, et al.
    Characterization of Osmads6-5, a null allele, reveals that OsMADS6 is a critical regulator for early flower development in rice (Oryza sativa L.).
    Plant Mol. Biol., 2012. 80(4-5): p. 429-42
    [PMID:22933119]
  3. Hu Y, et al.
    Interactions of OsMADS1 with Floral Homeotic Genes in Rice Flower Development.
    Mol Plant, 2015. 8(9): p. 1366-84
    [PMID:25917758]
  4. Bai X, et al.
    Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice.
    Sci Rep, 2016. 6: p. 19022
    [PMID:26744119]