PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g48350.1
Common NameDREB1E, ERF30, LOC4336721, Os04g0572400, OSJNBa0019K04.2
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 220aa    MW: 23899.7 Da    PI: 5.36
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g48350.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.72.5e-1751101155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       + ykGVr +   grWv+e+r+p   g ++r++lg+f tae+Aa+a++ a+ +l+g
  LOC_Os04g48350.1  51 PVYKGVRSRN-PGRWVCEVREP--HG-KQRIWLGTFETAEMAARAHDVAAMALRG 101
                       68****9666.9******9996..33.5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.6E-1251101IPR001471AP2/ERF domain
SMARTSM003801.7E-2752115IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-2052110IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.1E-3052111IPR001471AP2/ERF domain
PROSITE profilePS5103221.27252109IPR001471AP2/ERF domain
PRINTSPR003675.6E-85364IPR001471AP2/ERF domain
CDDcd000182.06E-2653111No hitNo description
PRINTSPR003675.6E-87591IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009631Biological Processcold acclimation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009089anatomyendosperm
PO:0007042developmental stagewhole plant fruit formation stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MEWAYYGSGY SSSGTPSPVG GDGDEDSYMT VSSAPPKRRA GRTKFKETRH PVYKGVRSRN  60
PGRWVCEVRE PHGKQRIWLG TFETAEMAAR AHDVAAMALR GRAACLNFAD SPRRLRVPPL  120
GAGHEEIRRA AVEAAELFRP APGQHNAAAE AAAAVAAQAT AASAELFADF PCYPMDGLEF  180
EMQGYLDMAQ GMLIEPPPLA GQSTWAEEDY DCEVNLWSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-13501081271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.575270.0root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO870356480.0
Expression AtlasQ8H273-
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00453DAPTransfer from AT4G25480Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g48350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g48350
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6066400.0AL606640.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019K04, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankAY1141100.0AY114110.1 Oryza sativa (japonica cultivar-group) apetala2 domain-containing CBF-1-like protein mRNA, complete cds.
GenBankAY7858960.0AY785896.1 Oryza sativa (japonica cultivar-group) cultivar Nipponbare OsDREB1E (DREB1E) gene, complete cds.
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8551580.0CR855158.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0147H17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635170.11e-161dehydration-responsive element-binding protein 1E
SwissprotA2XWL61e-162DRE1E_ORYSI; Dehydration-responsive element-binding protein 1E
SwissprotQ8H2731e-162DRE1E_ORYSJ; Dehydration-responsive element-binding protein 1E
TrEMBLA0A0D3FZ491e-160A0A0D3FZ49_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9ZPH91e-160A0A0D9ZPH9_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0H4M31e-160A0A0E0H4M3_ORYNI; Uncharacterized protein
TrEMBLA0A0E0PCW51e-160A0A0E0PCW5_ORYRU; Uncharacterized protein
TrEMBLI1PP101e-160I1PP10_ORYGL; Uncharacterized protein
STRINGOGLUM04G22260.11e-161(Oryza glumipatula)
STRINGORUFI04G23890.11e-161(Oryza rufipogon)
STRINGOS04T0572400-001e-161(Oryza sativa)
STRINGONIVA04G20840.11e-161(Oryza nivara)
STRINGORGLA04G0192900.11e-161(Oryza glaberrima)
STRINGOBART04G22220.11e-161(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25480.15e-37dehydration response element B1A
Publications ? help Back to Top
  1. Skinner JS, et al.
    Structural, functional, and phylogenetic characterization of a large CBF gene family in barley.
    Plant Mol. Biol., 2005. 59(4): p. 533-51
    [PMID:16244905]
  2. Nakano T,Suzuki K,Fujimura T,Shinshi H
    Genome-wide analysis of the ERF gene family in Arabidopsis and rice.
    Plant Physiol., 2006. 140(2): p. 411-32
    [PMID:16407444]
  3. Chen JQ,Meng XP,Zhang Y,Xia M,Wang XP
    Over-expression of OsDREB genes lead to enhanced drought tolerance in rice.
    Biotechnol. Lett., 2008. 30(12): p. 2191-8
    [PMID:18779926]
  4. Li S, et al.
    Mutation of OsGIGANTEA Leads to Enhanced Tolerance to Polyethylene Glycol-Generated Osmotic Stress in Rice.
    Front Plant Sci, 2016. 7: p. 465
    [PMID:27148296]