PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g46680.1
Common NameLOC4336606, Os04g0552700, OSJNBa0010H02.11, OSNPB_040552700
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 312aa    MW: 32709.4 Da    PI: 7.69
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g46680.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.00013526223
                      EETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                      +C+ C ++F ++  L  H+r+H
  LOC_Os04g46680.1  5 TCKLCYRRFGNPRALAGHMRSH 26
                      6********************9 PP
2zf-C2H211.60.00088174196123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++Cp C+k+F++   L  H  +H
  LOC_Os04g46680.1 174 FQCPACKKVFRSYQALGGHRASH 196
                       89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.099426IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.974427IPR007087Zinc finger, C2H2
SuperFamilySSF576673.67E-7526No hitNo description
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
PfamPF139120.0045626IPR007087Zinc finger, C2H2
SuperFamilySSF576673.67E-7169196No hitNo description
PfamPF139121.2E-11173198IPR007087Zinc finger, C2H2
SMARTSM003550.026174196IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.286174196IPR007087Zinc finger, C2H2
PROSITE patternPS000280176196IPR007087Zinc finger, C2H2
SMARTSM0035588238258IPR015880Zinc finger, C2H2-like
PfamPF139122.5E-9238259IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009066anatomyanther
PO:0001004developmental stageanther development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MAKNTCKLCY RRFGNPRALA GHMRSHSVAA SRSQISSTSS ASTSVAVGDD DGGGDAKRPI  60
QGYVLREKPK RRVRLAESDF SDRESETEYY SSPPHGKRAN TGSGDVEQVS SVSDATSEED  120
VALSLMMLSR DTWPATPPPP PPYRLRGAGY DDGSDGGDAP PAPAAAAAQK RTRFQCPACK  180
KVFRSYQALG GHRASHMRGG RGGCCAPPPN PPPSPATPLQ PLPECDGGEE EGAKPHPHEC  240
PYCFRVFASG QALGGHKRSQ LCSAAAAAAS GDDIPAMIKS NGFIDLNLPA PFDDVELSAV  300
SDPFLSSKPG S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16773KPKRRVR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.505940.0callus
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379916160.0
Expression AtlasQ7XT38-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g46680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g46680
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6066330.0AL606633.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0010H02, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634603.20.0zinc finger protein ZAT1
TrEMBLQ7XT380.0Q7XT38_ORYSJ; OSJNBa0010H02.11 protein
STRINGOS04T0552700-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35183377
Representative plantOGRP24041030
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02030.12e-27C2H2-like zinc finger protein