PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os04g46060.1 | ||||||||
Common Name | LOC4336561, Os04g0545000, OSNPB_040545000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | WRKY | ||||||||
Protein Properties | Length: 251aa MW: 27197.8 Da PI: 7.8086 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 101.6 | 4.5e-32 | 169 | 227 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk+s +prsYYrCt+++C+vkk+ver +ed ++v++tYeg+H+h+ LOC_Os04g46060.1 169 LDDGYKWRKYGQKVVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHTHT 227 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.9E-33 | 154 | 227 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.75E-28 | 161 | 227 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.897 | 164 | 226 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.3E-37 | 169 | 228 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.3E-25 | 170 | 226 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009047 | anatomy | stem | ||||
PO:0007010 | developmental stage | whole plant fruit ripening stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MYACMEGSQL ETACLPAALY APLCPYTPPS PPSFLAPLPS LQHKLPQLPQ LVHDHAAATG 60 TNHGVMFSSD HGCLYPLLPG IPFCLDSGCG AAACDDDKPA GFAHLGSAEA DTSAAAARVD 120 SEIAAAATAT TCHGPNSWWK GTEKGKMKVR RKMREPRFCF QTRSDVDVLD DGYKWRKYGQ 180 KVVKNSLHPR SYYRCTHNNC RVKKRVERLS EDCRMVITTY EGRHTHTPCS DDATTGAAGD 240 HTASCAFTSF * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-24 | 160 | 226 | 8 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 3e-24 | 160 | 226 | 8 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.53641 | 0.0 | callus |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32983718 | 0.0 | ||||
Expression Atlas | Q0JBA9 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00618 | PBM | Transfer from AT2G44745 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os04g46060.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os04g46060 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK073695 | 0.0 | AK073695.1 Oryza sativa Japonica Group cDNA clone:J033063J05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015635033.1 | 0.0 | probable WRKY transcription factor 12 | ||||
Swissprot | Q93WY4 | 1e-61 | WRK12_ARATH; Probable WRKY transcription factor 12 | ||||
TrEMBL | Q0JBA9 | 0.0 | Q0JBA9_ORYSJ; Os04g0545000 protein | ||||
STRING | OS04T0545000-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1138 | 38 | 130 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44745.1 | 1e-59 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os04g46060.1 |
Entrez Gene | 4336561 |
Publications ? help Back to Top | |||
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