PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g44670.1
Common NameLOC4336472, OsJ_15549, OSJNBa0074L08.10
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 467aa    MW: 49861.4 Da    PI: 8.9509
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g44670.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.8e-19214264256
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                        y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  LOC_Os04g44670.1 214 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 264
                       59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.82E-33213272No hitNo description
SuperFamilySSF541714.25E-23214273IPR016177DNA-binding domain
PROSITE profilePS5103222.998214271IPR001471AP2/ERF domain
SMARTSM003802.5E-38214277IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-32214272IPR001471AP2/ERF domain
PfamPF008472.8E-12215264IPR001471AP2/ERF domain
PRINTSPR003678.5E-11215226IPR001471AP2/ERF domain
PRINTSPR003678.5E-11237253IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MDAPSGESGG GGGGGGGRRW KGKGVTPIQP RRQLGTVLED SSAALLRPLK KIGRSPDRLL  60
RSASSLSTSS SAPPSPRSSS ASDAPVRVIS SSPSSPSPPS ARHIFPFAYE ASTTTVGGSP  120
RLHPLSWQQS SMSQPASPQQ QQQQPLQHQQ MISFGASPPC STTQFVVPEN AQQQQMLLRY  180
WSEALNLSPR GGPGGVPPWL YQQLLRVPPP PQKLYRGVRQ RHWGKWVAEI RLPRNRTRLW  240
LGTFDTAEDA AMAYDREAFK LRGENARLNF PDRFLGKGRA GGKGRTSVSS SAAAAASCSS  300
SSLSPPETPD DANTQQQAPQ QREQRDTAGV SMEKKQPQPP APTSRQEGCS GGDAAAPYPA  360
EMLHAPAACG GMWVAPDESW FSTWGPGSSF WDDYDMDSAR GLFLHPRFTG DETSMDHSGT  420
QATVPAVAAT AAGMSMPCDD VPVTSSSSDL PPQGTPQTPT FMWKED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-20213273465ATERF1
3gcc_A5e-20213273465ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.1007560.0panicle| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154595570.0
Expression AtlasQ7XUL8-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g44670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g44670
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6629760.0AL662976.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0074L08, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8552300.0CR855230.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0115K01-H0319F09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634091.10.0ethylene-responsive transcription factor ERF054
TrEMBLA2XVS00.0A2XVS0_ORYSI; Uncharacterized protein
TrEMBLQ01HM70.0Q01HM7_ORYSA; OSIGBa0115K01-H0319F09.25 protein
TrEMBLQ7XUL80.0Q7XUL8_ORYSJ; OSJNBa0074L08.10 protein
STRINGORUFI04G20990.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36913268
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.11e-35ERF family protein