PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os04g09560.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | CPP | ||||||||
Protein Properties | Length: 148aa MW: 16425.7 Da PI: 8.4868 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 42 | 1.8e-13 | 55 | 93 | 2 | 40 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++++C+C ks+C+k+YC Cf+a +Cs++C+C++CkN+e LOC_Os04g09560.1 55 QHRSCRCVKSNCVKLYCPCFSAYGYCSQNCRCTNCKNRE 93 6789*********************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 1.9E-10 | 54 | 95 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 18.019 | 55 | 147 | IPR005172 | CRC domain |
Pfam | PF03638 | 1.4E-10 | 57 | 93 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MGQASISSSS SSPATATVAA FSPLRPPSAA SHTNQAVDMK VLRWLISARS MSNDQHRSCR 60 CVKSNCVKLY CPCFSAYGYC SQNCRCTNCK NREYYEDFVE ERVDMIKMKN PRAFDPKIVR 120 VQDASEIEPQ SSNAVPMPEV QVPRTFV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os04g09560.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os04g09560 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL731589 | 1e-108 | AL731589.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039G19, complete sequence. | |||
GenBank | AP014960 | 1e-108 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633502.1 | 1e-59 | protein tesmin/TSO1-like CXC 4 | ||||
Refseq | XP_025880815.1 | 1e-59 | protein tesmin/TSO1-like CXC 4 | ||||
TrEMBL | A0A0D3FSK8 | 2e-71 | A0A0D3FSK8_9ORYZ; Uncharacterized protein | ||||
STRING | OBART04G02690.1 | 4e-72 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12267 | 23 | 36 | Representative plant | OGRP993 | 17 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04850.1 | 4e-17 | Tesmin/TSO1-like CXC domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os04g09560.1 |