PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g51910.1
Common NameLOC4333984, Os03g0728900, OsJ_12437, OSJNBb0011H13.2
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 328aa    MW: 36253.6 Da    PI: 5.6272
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g51910.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.71.4e-10156204355
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  LOC_Os03g51910.1 156 NSHSLAERLRRKKISERMKLLQDLVPGC----SKITGKAVMLDEIINYVQSLQ 204
                       58**************************....899*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.05E-16151220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.16E-11151208No hitNo description
Gene3DG3DSA:4.10.280.101.8E-16153221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.447153203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-8156204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-10159209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009049anatomyinflorescence
PO:0001083developmental stageinflorescence development stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MYSGQQSDQC PGPNSGKEFL EVNWDSVALH QKMGYNSGAF GFQAYPMVLE DREGLYRSPN  60
GTFCQNIQLS DDHSSGAKRR KGIDDHIALL NPSASSRIQN VGDQQTEVSS QQERISMEED  120
NQKSCSKMQS KEDSSDGDGT KEDYVHVRAK RGQATNSHSL AERLRRKKIS ERMKLLQDLV  180
PGCSKITGKA VMLDEIINYV QSLQRQVEFL SMKLATVNPE LSFDIEQILS KQMMLSQDRH  240
LAFYGVDPGS SALVAHFNQG IMQPEMLCNV SNPADVLQGT TIQDISTVNQ IPAMWEGLQN  300
IPHLNYNPGG AMAEGSTNNS GSMKIEK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.245400.0leaf| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154550980.0
Expression AtlasQ84LH4-
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g51910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g51910
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632666.10.0transcription factor bHLH74
RefseqXP_015632667.10.0transcription factor bHLH74
RefseqXP_025879964.10.0transcription factor bHLH74
RefseqXP_025879965.10.0transcription factor bHLH74
TrEMBLA0A0E0P0T00.0A0A0E0P0T0_ORYRU; Uncharacterized protein
TrEMBLA2XJ660.0A2XJ66_ORYSI; Uncharacterized protein
TrEMBLQ84LH40.0Q84LH4_ORYSJ; Helix-loop-helix DNA-binding domain containing protein, expressed
STRINGORUFI03G34210.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60333650
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.11e-54bHLH family protein