PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g51110.1
Common NameB1377B10.16, LOC4333934, Os03g0720800, OsJ_12381, OSJNBa0031O09.05, OSNPB_030720800
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB
Protein Properties Length: 246aa    MW: 27525.5 Da    PI: 8.1483
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g51110.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.72.7e-18449147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                      rg W + Ede+l+++v+++G+++W++Ia++++ gR++k+c++rw++ 
  LOC_Os03g51110.1  4 RGHWRPSEDEKLKELVARYGPHNWNAIAEKLQ-GRSGKSCRLRWFNQ 49
                      899*****************************.***********996 PP
2Myb_DNA-binding54.13.6e-175699146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                      r ++T+eE+ell+  ++ +G++ W+ Iar ++ gRt++ +k++w+ 
  LOC_Os03g51110.1 56 RSPFTEEEEELLLASHRAHGNR-WAVIARLFP-GRTDNAVKNHWHV 99
                      789*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.683154IPR017930Myb domain
SMARTSM007171.9E-15352IPR001005SANT/Myb domain
SuperFamilySSF466891.39E-29497IPR009057Homeodomain-like
PfamPF002496.0E-18449IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-27557IPR009057Homeodomain-like
CDDcd001673.46E-14748No hitNo description
SMARTSM007171.4E-1555103IPR001005SANT/Myb domain
PROSITE profilePS5129420.14455105IPR017930Myb domain
PfamPF002492.3E-145698IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-2158104IPR009057Homeodomain-like
CDDcd001671.10E-57198No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009047anatomystem
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MCTRGHWRPS EDEKLKELVA RYGPHNWNAI AEKLQGRSGK SCRLRWFNQL DPRINRSPFT  60
EEEEELLLAS HRAHGNRWAV IARLFPGRTD NAVKNHWHVI MARRCRERMR LSNRRGGAAA  120
AGAAKGDESP ARISNGEKTA TRPPATNGSG MAMASLLDKY RRECGAAGLF AIGRHHNSKE  180
DYCSSTNEDT SKSVEFYDFL QVNASSSDTK CGSSIEEQED NRDDDQAEGQ VQLIDFMEVG  240
TTSRQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-3411051105C-Myb DNA-Binding Domain
1msf_C2e-3411051105C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.497850.0flower| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379882230.0
Expression AtlasQ8LLP3-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in stamen (PubMed:19325888). Present in roots and siliques, and, at low levels, in leaves and flowers (PubMed:21399993). Expressed in stems, especially in fibers and, at lower levels, in xylems (PubMed:18952777, PubMed:21399993). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:19325888, ECO:0000269|PubMed:21399993}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that confers sensitivity to abscisic acid (ABA) and salt, but tolerance to drought (PubMed:21399993). Regulates secondary cell wall (SCW) biosynthesis, especially in interfascicular and xylary fibers (PubMed:18952777, PubMed:23781226). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:23781226}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00145DAPTransfer from AT1G17950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g51110.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (PubMed:16463103, PubMed:21399993). Accumulates in response to salt (PubMed:21399993). Triggered by MYB46 and MYB83 in the regulation of secondary cell wall biosynthesis (PubMed:19674407, PubMed:22197883). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19674407, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:22197883}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g51110
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1115600.0AK111560.1 Oryza sativa Japonica Group cDNA clone:J013060F16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628938.10.0transcription factor MYB52
SwissprotQ6R0C48e-77MYB52_ARATH; Transcription factor MYB52
TrEMBLA0A0D3FNC70.0A0A0D3FNC7_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0P0K70.0A0A0E0P0K7_ORYRU; Uncharacterized protein
TrEMBLI1PI980.0I1PI98_ORYGL; Uncharacterized protein
TrEMBLQ8LLP30.0Q8LLP3_ORYSJ; Myb-like DNA-binding domain containing protein, expressed
STRINGORUFI03G33630.10.0(Oryza rufipogon)
STRINGOS03T0720800-010.0(Oryza sativa)
STRINGORGLA03G0409400.10.0(Oryza glaberrima)
STRINGOBART03G32240.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.12e-76myb domain protein 52
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]
  3. Shi D, et al.
    MYB52 Negatively Regulates Pectin Demethylesterification in Seed Coat Mucilage.
    Plant Physiol., 2018. 176(4): p. 2737-2749
    [PMID:29440562]