PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g42430.1
Common NameLOC4333474, Os03g0622200, OsJ_11768, OSJNBb0111B07.22
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 379aa    MW: 42360.3 Da    PI: 7.4688
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g42430.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.16.9e-18421231499
                       T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
                B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                         +++p +fa++++g    s ++ l+++sg++W++ +   +++ +  vl+ GWkeFv+ ng++egD ++F+++g  s+f   v +f+ 
  LOC_Os03g42430.1  42 ESMTVPARFANNFNGH--ISEEVNLRSPSGETWSIGV--ANSDAGeLVLQPGWKEFVDGNGIEEGDCLLFRYSGVsSSF--DVLIFDP 123
                       4599******888666..6779***************..5555445***************************987888..8888875 PP
2B338.12.7e-12260340585
                       -..-HHHHT..T-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                B3   5 ltpsdvlks..grlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                         +s+v +s  +++ ++ +fa ++ g ++ +  +++le  ++g +W v + +r++ ++++ ++GW++F+ +n+L + D+++F+l+
  LOC_Os03g42430.1 260 IHSSHVRSSkyCIVGVSPEFAGKYlGAVE-R--EVVLERaSRGGEWHVPFVHRQNTRGFY-GAGWRQFAGDNRLVAHDVCLFELT 340
                       4445555445599999********76663.3..6999998999*******9999999986.77********************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.9E-2227126IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.56529124IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-2130129IPR015300DNA-binding pseudobarrel domain
CDDcd100172.41E-1930122No hitNo description
SMARTSM010193.0E-632124IPR003340B3 DNA binding domain
PfamPF023629.5E-1542122IPR003340B3 DNA binding domain
SuperFamilySSF1019366.28E-16250340IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-16250367IPR015300DNA-binding pseudobarrel domain
CDDcd100171.70E-11254339No hitNo description
SMARTSM010190.011256360IPR003340B3 DNA binding domain
PROSITE profilePS5086310.236256370IPR003340B3 DNA binding domain
PfamPF023628.4E-10268340IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020048anatomymicrospore
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MGMLKIGKNC SVCKEWQEHC YWSHMADHSK HFLKHMVGDF TESMTVPARF ANNFNGHISE  60
EVNLRSPSGE TWSIGVANSD AGELVLQPGW KEFVDGNGIE EGDCLLFRYS GVSSSFDVLI  120
FDPSGCEKAS PHFVGSHGFG RAENSAGAEQ GGRNGRRTPP IVDGDNGHRH HLEMTLHRNS  180
CRSIPRACKR SLFSDETEAK ENDGEDEDVV AAAEGGRYGE YYFSRHGRVA EYNLREEDRE  240
EISRVPVPVQ PGNPVFVQVI HSSHVRSSKY CIVGVSPEFA GKYLGAVERE VVLERASRGG  300
EWHVPFVHRQ NTRGFYGAGW RQFAGDNRLV AHDVCLFELT MVDAAASGGG NRRRRWSRRP  360
TMTVHVLRRV RGRFVLLR*
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329938690.0
Expression AtlasQ10GM3-
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g42430.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g42430
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1086600.0AK108660.1 Oryza sativa Japonica Group cDNA clone:002-148-F01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628568.10.0B3 domain-containing protein Os03g0622200
SwissprotQ10GM30.0Y3222_ORYSJ; B3 domain-containing protein Os03g0622200
TrEMBLB8AML50.0B8AML5_ORYSI; Uncharacterized protein
STRINGOS03T0622200-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Representative plantOGRP6299819
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-29B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]