PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g42280.1
Common NameLOC4333466, Os03g0620400, OsJ_11757, OSJNBb0111B07.7
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 520aa    MW: 59044.9 Da    PI: 8.6577
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g42280.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.71.6e-1635116997
                       HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                        ++  + +++p+kf++++gg    s+t+ l +++g ++ vk+  + + ++++l+ GW+ Fv+a++++e+D+++F+++++s+f   v ++
  LOC_Os03g42280.1  35 ANF-GHSMTIPNKFLDHFGGT--LSRTIELVSPKGIVYIVKV--TEHMNKTILQCGWEAFVDAHHIEENDSLLFRHIENSRF--EVLIL 116
                       334.456********888877..899****************..*********************************99999..66665 PP
2B362.76e-20248347198
                       EEEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SE CS
                B3   1 ffkvltpsdvlks.grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.se 89 
                       f+ ++++s+v+++ ++lv+pk++a++h   + es+t+tl+   ++++W   + +rk +++y+l ++Wk+Fv++n++kegD+++F+l+  +  e
  LOC_Os03g42280.1 248 FVAIMKHSNVNSRrACLVIPKRYASAHF--PLESQTITLQRqGKNKKWYPMFYIRKDGSGYMLYGCWKNFVRDNHVKEGDMCIFHLTkFTgGE 338
                       6677888888887788***********6..446779999985666****99977999999*************************87444566 PP

                       E..EEEEE- CS
                B3  90 felvvkvfr 98 
                       f  +v+++r
  LOC_Os03g42280.1 339 FGATVHLLR 347
                       666777666 PP
3B359.27.2e-19423515899
                       -HHHHT..T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
                B3   8 sdvlks..grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 
                       s+v++    ++++ ++fa+++ +++ e++   l++ +++ W+vk+  r +sg   ++t+GW++Fv++n+L+  D+++F+l+++ s+ +++v++
  LOC_Os03g42280.1 423 SNVGTDglYIIIFGRQFATRY-LPEGEQTLTLLMTGKSNAWQVKM--RPRSGDaQMITTGWRHFVHDNHLQIEDICLFQLMNDeSKLTMTVHI 512
                       555555112346689***999.3444455566777899*******..77777779**************************998********* PP

                       E-S CS
                B3  97 frk 99 
                       +r+
  LOC_Os03g42280.1 513 IRR 515
                       *98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.22E-2025124IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.12526119IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.6E-1926121IPR015300DNA-binding pseudobarrel domain
CDDcd100173.02E-1527117No hitNo description
SMARTSM010199.9E-829119IPR003340B3 DNA binding domain
PfamPF023627.6E-1534115IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.1E-21240333IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.63E-24242335IPR015300DNA-binding pseudobarrel domain
CDDcd100173.91E-22246347No hitNo description
PfamPF023624.3E-20248348IPR003340B3 DNA binding domain
SMARTSM010191.2E-7248350IPR003340B3 DNA binding domain
PROSITE profilePS5086313.197249349IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.0E-22408516IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-19409516IPR015300DNA-binding pseudobarrel domain
CDDcd100176.57E-15414514No hitNo description
PROSITE profilePS5086311.801416516IPR003340B3 DNA binding domain
SMARTSM010194.7E-6416516IPR003340B3 DNA binding domain
PfamPF023629.3E-19420516IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009049anatomyinflorescence
PO:0001083developmental stageinflorescence development stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MAGQGSQKKK SCDWSKRYVD HLNGKMKCFH LQMSANFGHS MTIPNKFLDH FGGTLSRTIE  60
LVSPKGIVYI VKVTEHMNKT ILQCGWEAFV DAHHIEENDS LLFRHIENSR FEVLILDSDG  120
CEKVFTCAGI KKTSSVQERN AAPVDISRST HDETTQSSGS KKFVRCQRAS DSQRGKTAKL  180
AETSSSGESG EEGTDSSTSE DESSYELDDP QMPPGRNYVL SRWTSLSEAQ EEKVDMLVQD  240
IQPEIPVFVA IMKHSNVNSR RACLVIPKRY ASAHFPLESQ TITLQRQGKN KKWYPMFYIR  300
KDGSGYMLYG CWKNFVRDNH VKEGDMCIFH LTKFTGGEFG ATVHLLRETK SGSLGSFHTS  360
HKRFDLRDGR TWPKVTGVRR VSSRPYLTAD RVSLTEEQVR KVEEVVHSIQ SEGPMYVSIM  420
NKSNVGTDGL YIIIFGRQFA TRYLPEGEQT LTLLMTGKSN AWQVKMRPRS GDAQMITTGW  480
RHFVHDNHLQ IEDICLFQLM NDESKLTMTV HIIRRNEKS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.593920.0callus| leaf
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329873780.0
Expression AtlasQ851W5-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g42280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g42280
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1021690.0AK102169.1 Oryza sativa Japonica Group cDNA clone:J033086H19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628609.10.0B3 domain-containing protein Os03g0620400 isoform X1
SwissprotQ851W50.0Y3204_ORYSJ; B3 domain-containing protein Os03g0620400
TrEMBLA2XJM20.0A2XJM2_ORYSI; Uncharacterized protein
STRINGORGLA03G0243900.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Representative plantOGRP1584433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-18B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]