PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g38870.1
Common NameLOC107280372, OsJ_11572, OSJNBa0010D22.15
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family Dof
Protein Properties Length: 372aa    MW: 36811 Da    PI: 8.5769
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g38870.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.43.7e-3944104262
            zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                       +e+ l+cprCds ntkfCyynnyslsqPr+fCk+CrryWtkGGalrnvPvGgg+rknk+s+
  LOC_Os03g38870.1  44 QEQGLRCPRCDSPNTKFCYYNNYSLSQPRHFCKTCRRYWTKGGALRNVPVGGGCRKNKRSR 104
                       57889*****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027017.9E-3346102IPR003851Zinc finger, Dof-type
ProDomPD0074781.0E-244797IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.60948102IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105086IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MAPAAGDDAV VPRKGAGGGG TTTPPPPPPA QQQQQQPLPP PPPQEQGLRC PRCDSPNTKF  60
CYYNNYSLSQ PRHFCKTCRR YWTKGGALRN VPVGGGCRKN KRSRSAAAAS RLSLNLPTVE  120
GIGGAAADPA AAAAARLGFL GGGTTMMMSS STSPLGGAAA AVADFQQGGA VGMLPLPRLQ  180
SPAGGGVGHH QYVPFGEWPS GDIAGGNAVN GGGGHGAVSS TIASSIESLS FINQDLHWKL  240
QQQRLATMFL GPPGSASAAA AAAQANDGGG NGAQATASGH AAGGGGGAFM HMAGSVPSME  300
AAMPSATSWF MDSCSYGLPS PPPPATAAVA ATTSSNLNSG GRSSGGDDNA TSNCGSAIPA  360
WGDISTFAML P*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ6F2W0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g38870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g38870
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1330030.0AC133003.3 Oryza sativa chromosome 3 BAC OSJNBa0010D22 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630014.10.0dof zinc finger protein DOF5.7
TrEMBLQ6F2W00.0Q6F2W0_ORYSJ; Dof domain, zinc finger family protein, expressed
STRINGOGLUM03G25260.11e-162(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14037367
Representative plantOGRP3817445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51700.13e-30DOF zinc finger protein 1