PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g19630.1 | ||||||||
Common Name | LOC107280281 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB_related | ||||||||
Protein Properties | Length: 190aa MW: 22195.5 Da PI: 11.8689 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35.5 | 2.3e-11 | 33 | 78 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqkyl 48 +WT+eEd l ++ + G+++W++ a+ m+ +R++ qc++rw+++l LOC_Os03g19630.1 33 AWTPEEDAVL-RLAMENGSRHWRRMAAQMPrRRRSPAQCRDRWRDHL 78 7*****9877.5667899999***********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.515 | 26 | 82 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-6 | 30 | 80 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-10 | 33 | 78 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.59E-15 | 33 | 132 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.3E-15 | 33 | 90 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.17E-7 | 33 | 78 | No hit | No description |
SMART | SM00717 | 3.7 | 83 | 134 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 5.808 | 87 | 132 | IPR017877 | Myb-like domain |
Pfam | PF13921 | 3.9E-5 | 87 | 134 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.0E-5 | 91 | 131 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MDMELSSSST TVASSPASPP LGRCVVRIRL PPAWTPEEDA VLRLAMENGS RHWRRMAAQM 60 PRRRRSPAQC RDRWRDHLAR DVFHRHFTSA DDTELARLCL HLDDAGHRWK HVSRAVYGRS 120 SCAVKRRWRE LRKSDAFLSA LWRPRTTAPQ PMRRSRRRVD ELWMSARARV VAHLIDDLLF 180 QEWFLLVGH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3osf_A | 2e-12 | 25 | 128 | 1 | 103 | MYB21 |
3osf_D | 2e-12 | 25 | 128 | 1 | 103 | MYB21 |
3osg_A | 2e-12 | 25 | 128 | 1 | 103 | MYB21 |
3osg_D | 2e-12 | 25 | 128 | 1 | 103 | MYB21 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q10MG5 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g19630.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g19630 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC137071 | 0.0 | AC137071.3 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0042B10, from chromosome 3, complete sequence. | |||
GenBank | AF461424 | 0.0 | AF461424.2 Oryza sativa chromosome 3 clone OSJNBa0016B07, complete sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629497.1 | 1e-132 | transcription factor MYB44-like | ||||
TrEMBL | Q10MG5 | 1e-131 | Q10MG5_ORYSJ; Myb-like DNA-binding domain containing protein | ||||
STRING | ORGLA03G0143400.1 | 1e-101 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8360 | 13 | 46 | Representative plant | OGRP10428 | 3 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67300.1 | 9e-11 | myb domain protein r1 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g19630.1 |
Entrez Gene | 107280281 |