PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g15790.1
Common NameOs03g0264600, OSNPB_030264600
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 455aa    MW: 48350 Da    PI: 8.708
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g15790.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.5e-05209232123
                       EEETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                       ++C+ Cg++ s + +L+ H+ + H
  LOC_Os03g15790.1 209 FPCKVCGEVLSKPQQLELHQAMkH 232
                       89******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.037209237IPR007087Zinc finger, C2H2
PROSITE patternPS000280211232IPR007087Zinc finger, C2H2
SuperFamilySSF563998.82E-12234453No hitNo description
Gene3DG3DSA:3.90.228.102.6E-8236453IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009038anatomypalea
PO:0001048developmental stagepalea development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MAGGGRCSSL LRGFVSLFFL LFIHIGHAGC CFSTGSSTQT LEEDDTGHGA DGRGGGGGGS  60
KRRKISPLAF SPSVSSSTVA DERSRARRRQ VSSLATSVRF YLHRIFSYSS GAKNGAGAPA  120
AEEEDEAVTT TVSSPLAQSS SCLPQRQASS SVVLSTPSSP CASPFLSPLS PQSLSITPAV  180
PSSPHNRQIP QATTRQSSFR SFAARGDVFP CKVCGEVLSK PQQLELHQAM KHSLSELSSL  240
DSSMNIIRMI FLAGWKPAVM PGAGEPPSVR RILRIHHNPR VLTRFEEYRD LVRARAARRC  300
AGAGAAAVEE RCVADGNERL RFYCSTMLCT LGAGVCGSPY CCTCSILRHG FAGKQADVDG  360
IATYSSGRAA HASLPDDVER EFAFLQVRRA MLVCRVVAGR VGRGAADDKV AYDSMVPLLP  420
TSSFAAATRG DDDVELLVFN PRAVLPCFVI IYSC*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.439600.0callus| flower| leaf| panicle| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2976007000.0
Expression AtlasA0A0N7KGZ5-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g15790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g15790
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1352050.0AC135205.4 Oryza sativa Japonica Group chromosome 3 clone OJ1012B02, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629299.10.0uncharacterized protein LOC4332342
TrEMBLA0A0N7KGZ50.0A0A0N7KGZ5_ORYSJ; Os03g0264600 protein (Fragment)
STRINGOS03T0264600-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105173037
Representative plantOGRP96611112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.11e-51C2H2 family protein