PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g12940.2
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 810aa    MW: 87347 Da    PI: 5.102
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g12940.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.12.4e-11637685355
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR++iN+++  L++l+P +    +k   Ka++L + ++Y++sLq
  LOC_Os03g12940.2 637 NSHSLAERFRREKINERMKLLQDLVPGC----NKITGKAMMLDEIINYVQSLQ 685
                       58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500538.96188IPR000626Ubiquitin domain
Gene3DG3DSA:3.10.20.909.5E-72099No hitNo description
SuperFamilySSF813831.83E-13337392IPR001810F-box domain
PROSITE profilePS5018111.405337383IPR001810F-box domain
Gene3DG3DSA:1.20.1280.502.2E-10340392No hitNo description
PfamPF129374.6E-6342384IPR001810F-box domain
SMARTSM002561.5E-5343383IPR001810F-box domain
CDDcd000832.96E-11632689No hitNo description
SuperFamilySSF474594.45E-17632700IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-17634701IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.796634684IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.0E-9637685IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-10640690IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 810 aa     Download sequence    Send to blast
MKLRLRSMDQ RGGAGGAAET HRVQLPDTAT LSDVKAFLAT KLSAAQPVPA ESVRLTLNRS  60
EELLTPDPSA TLPALGLASG DLLYFTLSPL PSPSPPPQPQ PQAQPLPRNP NPDVPSIAGA  120
ADPTKSPVES GSSSSMPQAL CTNPGLPVAS DPHHPPPDVV MAEAFAVIKS KSSLVVGDTK  180
REMENVGGAD GTVICRLVVA LHAALLDAGF LYANPVGSCL QLPQNWASGS FVPVSMKYTL  240
PELVEALPVV EEGMVAVLNY SLMGNFMMVY GHVPGATSGV RRLCLELPEL APLLYLDSDE  300
VSTAEEREIH ELWRVLKDEM CLPLMISLCQ LNNLSLPPCL MALPGDVKAK VLEFVPGVDL  360
ARVQCTCKEL RDLAADDNLW KKKCEMEFNT QDTCGCMMCK CIYSDQRKDI VLADKYTCGN  420
YMQKPVTQPG RWLIILVYHS LLCQYITIGL SLLWYHLVDL VQDAPAAGIH FDCIIPLPIN  480
PYQLPPSAGA CCSTTQASAS AKDGGNMYSP PCSAAASSQG HCFAVGANQL ASLDLAMDFD  540
EPILFPVHNA SLQEGIQFYN PTGDTQLSRN MSIDKCLKGS KRKGSGEGSS SLHSQEETGE  600
MPQRELSMEH AGEKAGDADA SREEYVHVRA KRGQATNSHS LAERFRREKI NERMKLLQDL  660
VPGCNKITGK AMMLDEIINY VQSLQRQVEF LSMKLSTISP ELNSDLDLQD ILCSQDARSA  720
FLGCSPQLSN AHPNLYRAAQ QCLSPPGLYG SVCVPNPADV HLARAGHLAS FPQRGLIWNE  780
ELRNIAPAGF ASDAAGTSSL ENSDSMKVE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.526140.0callus| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1166392720.0
Expression AtlasQ10PJ8-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g12940.2
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g12940
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1351570.0AC135157.2 Oryza sativa Japonica Group chromosome 3 clone OJ1017C11, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLQ10PJ80.0Q10PJ8_ORYSJ; Helix-loop-helix DNA-binding domain containing protein, expressed
STRINGORGLA03G0090200.10.0(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.12e-45bHLH family protein