PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g05480.1
Common NameLOC4331626, Os03g0148800, OsJ_09416, OSJNBb0050N02.7, OSNPB_030148800
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 652aa    MW: 69511.6 Da    PI: 5.3218
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g05480.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.7e-05540565123
                       EEET..TTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                       ++C+  +C ++F+++ +L +H ++ +
  LOC_Os03g05480.1 540 FQCEidYCRMTFKNRAELSVHKKNtC 565
                       89*******************99866 PP
2zf-C2H212.40.00048565587323
                       ET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                       C+   Cg++F+++ +L+rH++ H
  LOC_Os03g05480.1 565 CTvkSCGRHFRSHKYLRRHQSIH 587
                       88889***************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035516540562IPR015880Zinc finger, C2H2-like
SMARTSM003550.42563587IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.009563592IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.9E-4564587IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280565587IPR007087Zinc finger, C2H2
SuperFamilySSF576673.68E-9579621No hitNo description
Gene3DG3DSA:3.30.160.606.2E-10588614IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.887593622IPR007087Zinc finger, C2H2
SMARTSM003550.04593617IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280595617IPR007087Zinc finger, C2H2
SuperFamilySSF576676.08E-7612646No hitNo description
Gene3DG3DSA:3.30.160.602.6E-7615645IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035539623645IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009009anatomyplant embryo
PO:0001081developmental stagemature plant embryo stage
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    Send to blast
MRIRRYAARL LASSTATAPS SLPPPPAASA AWCHAAADDC AICDLTRSAS PQVVAPDAIK  60
QKGHIAGRAL EPELRSDPRV GLAERTPVPE DQGRDIDDGP PAKRSLTFTD AAARLEGSGN  120
VGAGVATEPA ARLGAPVANG AVSGQEDRAA TCLADESAAE LIATGVTSLV TGATAEPEVL  180
KGASFANTNV TEPRVSERVP LVREAATEPE AEVSMREVTE GALPDGEGAA KLEITGGLSR  240
ESADKMEVTK GISLVTEASA DSELAQRVPT EPGVELSLPE VTERVPVVTE DFTELGDTFS  300
GLHITGFASL DNEGSVEQEV TGSGSLVNEA TEMEVKEGTC IFTRVATELG DTGRVSACSG  360
DGDIALDEPR PPDCVSEVAN VNVGNAGEAV ASKVQPFRDN AESVGGSINS TGNGHVSSKS  420
PTADEAAPPG GCTDTPSVSC LSDIVARSIG KSGRTDIICY VRRRGKRKLE MVEVKEENVE  480
MDDSAICDQY DDKVASERTG PCESVTSTAV SVEIKIADIK RELEDNSTAS KGKKKRAKRF  540
QCEIDYCRMT FKNRAELSVH KKNTCTVKSC GRHFRSHKYL RRHQSIHNDD MPYKCPWEGC  600
SMAFKWSWDR GEHFQVHAGK RPYKCTTPGC SKIYKFVSDF TRHKRRCKPQ R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A4e-4354064623129Lysine-specific demethylase REF6
6a58_A4e-4354064623129Lysine-specific demethylase REF6
6a59_A4e-4354064623129Lysine-specific demethylase REF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1461467RRRGKRK
2461468RRRGKRKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.83010.0flower| leaf| panicle| stem| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329788280.0
Expression AtlasQ8H084-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g05480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g05480
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0688030.0AK068803.1 Oryza sativa Japonica Group cDNA clone:J013161F12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632116.10.0uncharacterized protein LOC4331626
TrEMBLA0A0E0NPQ50.0A0A0E0NPQ5_ORYRU; Uncharacterized protein
TrEMBLQ8H0840.0Q8H084_ORYSJ; Os03g0148800 protein
STRINGORUFI03G03520.10.0(Oryza rufipogon)
STRINGOS03T0148800-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114913241
Representative plantOGRP1198156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.15e-41relative of early flowering 6