PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g03260.1 | ||||||||
Common Name | LOC4331452, Os03g0124000, OSNPB_030124000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | TALE | ||||||||
Protein Properties | Length: 592aa MW: 62754.1 Da PI: 6.9511 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.3 | 6.3e-09 | 344 | 381 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps ++ LA+++gL+ +qV++WF N R + LOC_Os03g03260.1 344 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 381 564459******************************88 PP | |||||||
2 | BELL | 87.7 | 1.2e-28 | 207 | 276 | 3 | 72 |
BELL 3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 elq+ k kL +leeVd+rY++y+eq+++v++ Feavag +a Yt++A ++iSrhFr+L+d i+ q+ LOC_Os03g03260.1 207 LELQRLKDKLYIMLEEVDRRYRRYCEQMRAVAGGFEAVAGERAAGAYTAVAARTISRHFRSLRDGIVAQL 276 58999**************************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 8.6E-43 | 138 | 274 | IPR006563 | POX domain |
Pfam | PF07526 | 5.9E-42 | 144 | 272 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.017 | 322 | 385 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.7E-9 | 325 | 389 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.79E-12 | 325 | 386 | No hit | No description |
SuperFamily | SSF46689 | 1.58E-17 | 326 | 392 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.9E-28 | 328 | 391 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 7.7E-18 | 342 | 381 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 592 aa Download sequence Send to blast |
MAHDPNLGFA DYFSAADASA SSVTTLMPAM DEAAPELFGL QAGMELLGVR GLGMSMMPGA 60 AGKVAALVAD AGDDGGGGST MRFLSEQHQQ PSQAPLSLSL CRPDGVLHLG GAARPQHQLA 120 PAAPWMTHHD ASSSAPQVHG AWHLRSSRFL LPTQQLLQEF CSLPVDSTKR GNGAKAATQQ 180 EDGRGDGSSS SSASWTPSPQ IQAMEALELQ RLKDKLYIML EEVDRRYRRY CEQMRAVAGG 240 FEAVAGERAA GAYTAVAART ISRHFRSLRD GIVAQLQAAR KALGEKDVSA AGTTRGQTPR 300 LRVIDQCIRH HKSLQGVAAM DSHPWRPQRG LPDRAVTILR AWLFEHFLHP YPSDVDKHIL 360 ARQTGLSRSQ VSNWFINARV RLWKPMVEEM YVEEMKGQDG GDGSGGQGSL NPKPTCSHAS 420 EARGGQQLVV GDGDGGEQKP TRAQLRHDAG SLASVVNVDV AAGAGGVARL HQAENFGIMD 480 HLDFDAYDDS HHQQQHGGFG GVSLTLGLQQ HGSHGGGGVN IAFGAPGSAH GGAGFLYPGE 540 QMAPDAMHPG HGHHVVGGQF GVAMDGDAAS HAQERYRSLS AGFHLLRDLA G* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5bng_A | 5e-17 | 331 | 389 | 1 | 59 | Homeobox protein Meis2 |
5bng_B | 5e-17 | 331 | 389 | 1 | 59 | Homeobox protein Meis2 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.50442 | 0.0 | flower| panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 37990830 | 0.0 | ||||
Expression Atlas | Q10SF7 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g03260.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g03260 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK121207 | 0.0 | AK121207.1 Oryza sativa Japonica Group cDNA clone:J023088C15, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015628192.1 | 0.0 | homeobox protein BEL1 homolog | ||||
TrEMBL | Q10SF7 | 0.0 | Q10SF7_ORYSJ; Associated with HOX family protein, expressed | ||||
STRING | OS03T0124000-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3814 | 37 | 64 | Representative plant | OGRP133 | 16 | 172 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41410.1 | 3e-76 | TALE family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g03260.1 |
Entrez Gene | 4331452 |