PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g57550.1 | ||||||||
Common Name | LOC107280032, OJ1119_A01.7, OsJ_08911, P0474F11.22 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C2H2 | ||||||||
Protein Properties | Length: 196aa MW: 20432.9 Da PI: 5.4091 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.1 | 0.00029 | 47 | 69 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C + F++ L H+++H LOC_Os02g57550.1 47 YNCTFCRRGFPTAQALGGHMNVH 69 89*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.65E-6 | 44 | 73 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.8E-4 | 45 | 73 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 3.9E-6 | 47 | 71 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.471 | 47 | 74 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 49 | 69 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MSQKTSKDEV IGGRSPSGDG DKAEEELREA RSGDDDDDDE AGTRQPYNCT FCRRGFPTAQ 60 ALGGHMNVHR KDRVGRATPS SSSSTTAAAA RRSVSYDTLV RLFRPPASGG SEDAAASTAA 120 GGGASLRSRT AEPAPQELRL FGRGAGRREE GGGRDRRDRY GCCSKDGDGN GGHDHGEEEE 180 LDLELRLGGS GSAGS* |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q6K704 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g57550.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g57550 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004020 | 0.0 | AP004020.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1119_A01. | |||
GenBank | AP004878 | 0.0 | AP004878.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0474F11. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624572.1 | 1e-135 | zinc finger protein 11 | ||||
TrEMBL | Q6K704 | 1e-134 | Q6K704_ORYSJ; Uncharacterized protein | ||||
STRING | ORUFI02G39170.1 | 1e-134 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14547 | 22 | 24 | Representative plant | OGRP1998 | 11 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43540.1 | 7e-12 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g57550.1 |
Entrez Gene | 107280032 |