PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g53620.1 | ||||||||
Common Name | LOC9270863, Os02g0776400, OSNPB_020776400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NF-YA | ||||||||
Protein Properties | Length: 271aa MW: 29450.8 Da PI: 10.811 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 104 | 1.3e-32 | 97 | 153 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p+YVN+KQy++Il+RRq Rakle+++kl k+rkpylheSRh+hA++R+Rg+gGrF LOC_Os02g53620.1 97 DGPIYVNPKQYHGILRRRQLRAKLEAQNKL-VKTRKPYLHESRHRHAMKRARGTGGRF 153 57****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 2.0E-37 | 95 | 156 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 37.735 | 96 | 156 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 3.3E-24 | 99 | 121 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 2.1E-28 | 99 | 153 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 3.3E-24 | 130 | 153 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009066 | anatomy | anther | ||||
PO:0001004 | developmental stage | anther development stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MLLPSSSSYS YASKGDSFRR TVDGPMRSTL TFDNNHSVVP SQNIDYGQPM ACISYPYNDS 60 GSGVWASYSS RSVFHPQIVG GGTSPRVPLP SLEIADDGPI YVNPKQYHGI LRRRQLRAKL 120 EAQNKLVKTR KPYLHESRHR HAMKRARGTG GRFLNTKQLQ LQQQSHTTST KTTTDSQNSS 180 GSVHLRLGGG AIGDQTPFPF KAMDSQANIK RAAASASTFT VTSAAQKDDA FFDRHGHHLS 240 SFSGHFGQAS AQGGVGSMHN GSQQRVPAMR * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 1e-19 | 99 | 158 | 4 | 63 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 137 | 146 | RHRHAMKRAR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.76669 | 0.0 | callus| flower |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | A0A0N7KG67 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g53620.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g53620 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK318574 | 0.0 | AK318574.1 Oryza sativa Japonica Group cDNA, clone: J090045B17, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015623432.1 | 0.0 | nuclear transcription factor Y subunit A-4 | ||||
TrEMBL | A0A0N7KG67 | 0.0 | A0A0N7KG67_ORYSJ; Os02g0776400 protein | ||||
STRING | OS02T0776400-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13276 | 28 | 33 | Representative plant | OGRP14632 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54160.1 | 3e-31 | nuclear factor Y, subunit A5 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g53620.1 |
Entrez Gene | 9270863 |