PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g39540.1 | ||||||||
Common Name | LOC4329935, Os02g0608300, OSNPB_020608300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | FAR1 | ||||||||
Protein Properties | Length: 821aa MW: 93044.3 Da PI: 8.9983 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 54.5 | 4e-17 | 54 | 137 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YA++vGF v++++s+ s ++g++ +++C k g+++ e k r+ra++ t+C ak++vk++ d+ +v+ l+HnH+++ LOC_Os02g39540.1 54 RFYRRYARRVGFGVSVRRSSFS-QEGTCLYLELMCCKGGRPRYEPKF-----RKRASSTTNCPAKIRVKLWGDKLLHVELAILDHNHPVS 137 5*****************9999.6677****************9988.....99*********************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.3E-15 | 54 | 138 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 3.7E-30 | 257 | 350 | IPR018289 | MULE transposase domain |
Pfam | PF04434 | 2.2E-6 | 537 | 576 | IPR007527 | Zinc finger, SWIM-type |
PROSITE profile | PS50966 | 9.371 | 544 | 580 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 4.0E-5 | 555 | 582 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 821 aa Download sequence Send to blast |
MMEAEEAFPP QRNPRRARRR DLNALDPSLE ESDGEDIGVP EVGMVFNNHT EVNRFYRRYA 60 RRVGFGVSVR RSSFSQEGTC LYLELMCCKG GRPRYEPKFR KRASSTTNCP AKIRVKLWGD 120 KLLHVELAIL DHNHPVSPAM ARFLNSYKQL SGPAKRRLRM GGPGAMPVEE PSKMPVDKLG 180 ALEELLFGES KHHSFVERGR LKFQPGDSEA LRLFFTRMQA KNANFFNVID LDDEGCVRNV 240 FWVDARSRSM YEFYNDVVTL DTSYVVGKYD MPLATFIGVN HHGQSVLLGC GLLSDETAET 300 YSWLFKAWIA CMYGNLPKAI ITGHCRGIQS AVAEVIPGVH HRICLFHIMR KATERLGGLS 360 EYAAISKAFQ KAVYDSLTID EFEGNWNALI TYNGLQGNDW LRSIYECRYS WVPVFLKDTF 420 WAGMSATQRN ENIIPFFDGY VDLKTTLKHF LGKYEMALQS KYEKEAQADF ETFHKQRPPV 480 SKFYMEEQLS KVYTHNIFKK FQDEIEAIMY CHVSFINVDG LISTFDVKEW IFLEDGKRTM 540 SKIFTVTNNT DKNDLTCICG GFQFNGILCR HSLSVLKFQQ VREIPPHYVL DRWKKDFRQL 600 HVMGRPSSDV VPNNRVDRYD YLSMRCLQLV DSAVLSDKYR LALRLVREME KFMLNSNTHD 660 DTQPRIKSRI PKANKPNTVV GQNLVNVGTY NGNDRPKATT EMQASSLTQG LDVQKGGAEK 720 GIVPAGYIGL PANVQQFVGS QTAIRPSIVY MVPSGVDPQA FGNGVLMPVV YQQMFQVPQQ 780 PNGTMPDTSA NGKRKRPRAQ KPTEASEQSN GTPATGPTSG * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.16480 | 0.0 | callus| flower| leaf| panicle| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32983550 | 0.0 | ||||
Expression Atlas | Q0DZN8 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g39540.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g39540 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK073527 | 0.0 | AK073527.1 Oryza sativa Japonica Group cDNA clone:J033046M02, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015625320.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6 isoform X1 | ||||
TrEMBL | Q0DZN8 | 0.0 | Q0DZN8_ORYSJ; Os02g0608300 protein | ||||
STRING | OS02T0608300-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 | Representative plant | OGRP30 | 12 | 351 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52520.1 | 1e-135 | FAR1-related sequence 6 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g39540.1 |
Entrez Gene | 4329935 |