PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g34630.1
Common NameOJ1004_H01.10, Os02g0551400, OSNPB_020551400
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 720aa    MW: 75972.7 Da    PI: 10.131
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g34630.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.81e-07222266244
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrw 44 
                       ++W+ eEd  l  +v+++G g+W  I ++      Rt  q++ rw
  LOC_Os02g34630.1 222 KPWSREEDMELGAGVQKHGEGNWMEILHKYKfdSSRTHLQLQQRW 266
                       68******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.555216274IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-11216273IPR009057Homeodomain-like
SMARTSM007172.4E-6220272IPR001005SANT/Myb domain
PfamPF002493.6E-6222266IPR001005SANT/Myb domain
SuperFamilySSF466897.03E-13223282IPR009057Homeodomain-like
CDDcd116607.27E-18224271No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031627Biological Processtelomeric loop formation
GO:0000784Cellular Componentnuclear chromosome, telomeric region
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009049anatomyinflorescence
PO:0001083developmental stageinflorescence development stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 720 aa     Download sequence    Send to blast
MKKEFPGQAP TSRLHSEMDA AAAGGGGAAK RKRSFSEDDA YLILHRYQPA TILTMLQEMG  60
KQVGAGKGID WRALVRRTST GITSAREYQM LWRHLAYGHE FVESVEPASL PLDDGSDLEC  120
EIEIVPAPGN EALAEATSFA KTIITGSSRE QTSGQRVNSE AAALNTPNEK IVRVPSDKQL  180
VPGHRLTNGT GPVSSSKQPS HTGSSPDPLD PNGHPKKKKK PKPWSREEDM ELGAGVQKHG  240
EGNWMEILHK YKFDSSRTHL QLQQRWALIC KRQGSTKPAT PKIPNVMSEE LKAAQKAFSL  300
AIGTTRSSTL RPGGVPHHNP MVTTTNPEVK SVTAPSPLPV PVHVVPVPVP VQPVQVQLPP  360
PQLHQAPAQS APPPPKVSNA SNKSRNNSKK QVAQSIPVNG PLSIQEAALA AGGRIAEPSV  420
ATNFLKAAQS TKAVHIRSRG TGSSKSSTGS KTPTVAGEPG TQLGSDQHLE LQSTGGPSQV  480
LTAHATEQVH NVSEVAGVNP LGQSAGVHLS ETKKALNTTP VSGSSDKMEI DDNSNYFAVT  540
MEDLFPEDVK QEDVQDPKIE EAIDPKDADM LEFDRFVAQG CLNKDNVDKS KAAKIAPEAQ  600
SVIGSQKKQL KTLPTVGKSN PVFAGPPATA KKTKAPVPQG GMSSGIVGVL NRSLGGKAPA  660
PATTGTQSTV QKQQSMSSKG NLLVPKNVAP GTVTPANNRA NTAVNGASKV NPPASQKPA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1214220PKKKKKP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.149850.0callus| flower| leaf| panicle| root| seed| stem| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329784660.0
Expression AtlasQ6ZI39-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g34630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g34630
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0684480.0AK068448.1 Oryza sativa Japonica Group cDNA clone:J013152C15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627404.10.0uncharacterized protein LOC4329631
TrEMBLQ6ZI390.0Q6ZI39_ORYSJ; Myb-family transcription factor-like protein
STRINGOS02T0551400-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46843754
Representative plantOGRP59231520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.13e-39MYB_related family protein