PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g13710.1
Common NameLOC107280052, OJ1711_D06.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 248aa    MW: 25408.4 Da    PI: 4.9562
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g13710.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.14.3e-184491152
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52
                      + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++aa++ 
  LOC_Os02g13710.1 44 PSYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDAAALV 91
                      57*****998.**********843...6*********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-124491IPR001471AP2/ERF domain
CDDcd000182.98E-2044103No hitNo description
SuperFamilySSF541712.55E-2145103IPR016177DNA-binding domain
PROSITE profilePS5103223.03745102IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-3145104IPR001471AP2/ERF domain
SMARTSM003801.9E-3445108IPR001471AP2/ERF domain
PRINTSPR003673.4E-104657IPR001471AP2/ERF domain
PRINTSPR003673.4E-106884IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MPELEVCSPA SSGGASPPES PVEGRRGGGG GEKRGRSGDG GRHPSYRGVR MRAWGKWVSE  60
IREPRKKSRI WLGTFPTPEM AARAHDAAAL VVKGPAAVLN FPDMAASLPR PASASPRDVQ  120
AAAARAAAME PPQPPPSSLT VQADSAAAAF LTPKNGGVSG AGAADDELEA IVELPRLDEL  180
DAAELVFGAA FQDTAAEHPW CDPVWIDGGY AAAAAAAAAA AAHDDLFGLD ADHHGWAQSV  240
GALLWNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1834102372Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.273840.0leaf| seed
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ6ETB0
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g13710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g13710
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0048570.0AP004857.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1711_D06.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624743.11e-173ethylene-responsive transcription factor ERF039
SwissprotQ9LYD31e-50DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A0E0NC401e-172A0A0E0NC40_ORYRU; Uncharacterized protein
TrEMBLI1NYR51e-172I1NYR5_ORYGL; Uncharacterized protein
TrEMBLQ6ETB01e-172Q6ETB0_ORYSJ; Putative AP2 domain-containing protein
STRINGORUFI02G09750.11e-173(Oryza rufipogon)
STRINGORGLA02G0087100.11e-173(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.13e-27ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]