PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g09650.1
Common NameLOC4328564, OJ1145_F01.32, Os02g0189600, OSJNBb0031B09.11
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 200aa    MW: 21092.6 Da    PI: 8.2356
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g09650.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.5e-191565256
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                      +++GVr ++ +gr++AeIrdp    k++r++lg++++ae+Aa+a++aa+++l+g+
  LOC_Os02g09650.1 15 RFRGVRKRP-WGRYAAEIRDPA---KKARVWLGTYDSAEDAARAYDAAARALRGA 65
                      69*******.**********83...36*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.5E-311573IPR001471AP2/ERF domain
CDDcd000181.02E-171574No hitNo description
SMARTSM003801.7E-361578IPR001471AP2/ERF domain
PfamPF008471.4E-121564IPR001471AP2/ERF domain
PROSITE profilePS5103223.4061572IPR001471AP2/ERF domain
SuperFamilySSF541714.64E-221574IPR016177DNA-binding domain
PRINTSPR003676.4E-101627IPR001471AP2/ERF domain
PRINTSPR003676.4E-103854IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009089anatomyendosperm
PO:0007042developmental stagewhole plant fruit formation stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MRRGGAAEED AEAARFRGVR KRPWGRYAAE IRDPAKKARV WLGTYDSAED AARAYDAAAR  60
ALRGAKAKTN FPLSLPHAQP QLHHHHHHHL TYPAAAVVAA RPATSSLSST VESFGTRPRP  120
VLPPRPPPPP PIPDGDCRSD CGSSASVVDD DCADAAASPS CRLPFQFDLN LPPGGGGGGG  180
GGFGCAYDDE ELRLTALRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-211175166ATERF1
3gcc_A3e-211175166ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.1001270.0flower| leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1166401010.0
Expression AtlasQ6YUU8-
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g09650.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), ethylene and Alternaria brassicicola (locally and systemically). Moderate induction by wounding or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate slightly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by ethylene, exogenous abscisic acid (ABA), cold and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g09650
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040460.0AP004046.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1145_F01.
GenBankAP0058490.0AP005849.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0031B09.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879040.11e-141ethylene-responsive transcription factor 3
SwissprotO803392e-32ERF82_ARATH; Ethylene-responsive transcription factor 3
TrEMBLI1NY241e-139I1NY24_ORYGL; Uncharacterized protein
TrEMBLQ6YUU81e-139Q6YUU8_ORYSJ; Os02g0189600 protein
STRINGORGLA02G0063000.11e-140(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51232758
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.16e-12erf domain protein 9
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]