PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g07840.2 | ||||||||
Common Name | LOC4328469, OJ1077_E05.6, Os02g0175100, OSJNBa0073A21.32, OSNPB_020175100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bZIP | ||||||||
Protein Properties | Length: 278aa MW: 29312.4 Da PI: 4.8647 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 52.7 | 9.6e-17 | 122 | 173 | 4 | 58 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 +kr rr+ +NRe+ArrsR+RK+a ++ Le v++L +eN +L k +l++ ++ LOC_Os02g07840.2 122 VKRVRRMVSNRESARRSRKRKQAHLADLESQVDQLRGENASLFK---QLTDANQQ 173 79**************************************9995...55555554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 7.9E-18 | 119 | 183 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.174 | 121 | 173 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 3.5E-14 | 122 | 171 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.59E-13 | 122 | 174 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.3E-13 | 123 | 174 | No hit | No description |
CDD | cd14702 | 3.11E-23 | 124 | 174 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 126 | 141 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MDIEAFIHGG SGGGDADADH PLGIFSAADL SGFGFADSST ITGGIPNHIW PQSQNLNARH 60 PAVSTTIESQ SSICAASPTS ATNLNMKESQ TLGGTSGSDS ESESLLDIEG GPCEQSTNPL 120 DVKRVRRMVS NRESARRSRK RKQAHLADLE SQVDQLRGEN ASLFKQLTDA NQQFTTSVTD 180 NRILKSDVEA LRVKVKMAED MVARGALSCG LGHLGGLSPA LNPRQACRVP DVLAGLDYAG 240 DDPFTAGLSQ PEQLQMPGGE VVDAWGWDNH PNGGMSK* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 135 | 141 | RRSRKRK |
2 | 135 | 142 | RRSRKRKQ |
3 | 137 | 142 | SRKRKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.49514 | 0.0 | callus| flower| leaf| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 556408 | 0.0 | ||||
Expression Atlas | Q6H500 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in developing seeds from 10 to 30 days after flowering (DAF). {ECO:0000269|PubMed:11133985}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters. {ECO:0000269|PubMed:11133985}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g07840.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g07840 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK069575 | 0.0 | AK069575.1 Oryza sativa Japonica Group cDNA clone:J023025A18, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015623253.1 | 0.0 | bZIP transcription factor RISBZ4-like isoform X2 | ||||
Swissprot | Q6H500 | 0.0 | RSBZ4_ORYSJ; bZIP transcription factor RISBZ4 | ||||
TrEMBL | A0A0E0CGG2 | 0.0 | A0A0E0CGG2_9ORYZ; Uncharacterized protein | ||||
STRING | OS02T0175100-01 | 0.0 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24800.1 | 1e-37 | basic leucine zipper 9 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g07840.2 |
Entrez Gene | 4328469 |
Publications ? help Back to Top | |||
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