PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g07170.1 | ||||||||
Common Name | LOC4328426, Os02g0168200, OSJNBa0085K21.53, OSNPB_020168200, P0669G09.7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | G2-like | ||||||||
Protein Properties | Length: 236aa MW: 25800.8 Da PI: 9.4843 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 93.9 | 1.3e-29 | 33 | 86 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rW +eLH+rFv+av++LGG ++AtPk+i++lm+ kg++++hvkSHLQ+YR LOC_Os02g07170.1 33 PRMRWPEELHRRFVHAVRRLGGCHEATPKRIMQLMGAKGVSISHVKSHLQMYRN 86 9****************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.5E-27 | 29 | 87 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.4E-14 | 31 | 87 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.4E-22 | 33 | 86 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.5E-8 | 34 | 85 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MGARGRRDRM GSAGGGGGSP PVVVRRYNRS EAPRMRWPEE LHRRFVHAVR RLGGCHEATP 60 KRIMQLMGAK GVSISHVKSH LQMYRNSNNS SNVNRRHPVT PQIDWTTTAQ QDEQQRRQMS 120 SFSFLATRTV PAAGIGSHSH QRPHRRQALH AGDDDGCELT LSISGGAAEE SKDGGSSITD 180 DDDELLIQPP APNIINDDGS TRHGHRHPFA CSTQPLPPAA INLELTISSP CCWLT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 4e-14 | 34 | 87 | 3 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 4e-14 | 34 | 87 | 3 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 4e-14 | 34 | 87 | 3 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 4e-14 | 34 | 87 | 3 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.55501 | 0.0 | panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q6H4V0 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g07170.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g07170 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT831400 | 0.0 | CT831400.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA117D12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624627.1 | 1e-175 | transcription factor HHO5 | ||||
TrEMBL | Q6H4V0 | 1e-173 | Q6H4V0_ORYSJ; Os02g0168200 protein | ||||
STRING | OS02T0168200-01 | 1e-174 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP19910 | 8 | 8 | Representative plant | OGRP285 | 15 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14600.1 | 2e-20 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g07170.1 |
Entrez Gene | 4328426 |