PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g74410.1 | ||||||||
Common Name | LOC4324302, Myb, OsJ_04957 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB | ||||||||
Protein Properties | Length: 277aa MW: 31029.4 Da PI: 7.3969 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.5 | 7.5e-14 | 58 | 105 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed +lv v++lG ++W+ a+ g+ R++k+c++rw +yl LOC_Os01g74410.1 58 KGPWTEQEDVQLVWFVRLLGERRWDFLAKVSGLQRSGKSCRLRWVNYL 105 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 56.5 | 6.6e-18 | 111 | 156 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgr+++eE+ v+++++lG++ W++Ia+ ++ gRt++++k++w+++l LOC_Os01g74410.1 111 RGRMSPEEERMVVQLHAKLGNR-WSRIAKSIP-GRTDNEIKNYWRTHL 156 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 6 | 1 | 25 | No hit | No description |
PROSITE profile | PS51294 | 12.982 | 53 | 105 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.15E-27 | 57 | 152 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.3E-11 | 57 | 107 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-12 | 58 | 105 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-17 | 59 | 112 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.62E-8 | 60 | 105 | No hit | No description |
PROSITE profile | PS51294 | 26.333 | 106 | 160 | IPR017930 | Myb domain |
SMART | SM00717 | 2.8E-17 | 110 | 158 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-16 | 111 | 156 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-24 | 113 | 158 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.06E-12 | 113 | 156 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MVVAGKKQGR HSFSASSSSS SSSSCSVVQL GHHQRPQGED PLIGIKAAAA GGGGIMRKGP 60 WTEQEDVQLV WFVRLLGERR WDFLAKVSGL QRSGKSCRLR WVNYLHPGLK RGRMSPEEER 120 MVVQLHAKLG NRWSRIAKSI PGRTDNEIKN YWRTHLRKLK LKQQKQQQSD DHHNDNDDDD 180 DRNSSSSSSS SNSNSNLQQQ PQPEDESSAS GSLQAQHHED QHQLFLHPLW NDDIIVDVDC 240 WSSSTNVVAP PPMPASPLWD IDDAFFCSDY SLPLWG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-26 | 58 | 158 | 4 | 103 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 5e-26 | 58 | 158 | 58 | 157 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 5e-26 | 58 | 158 | 58 | 157 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 1e-26 | 55 | 158 | 1 | 103 | C-Myb DNA-Binding Domain |
1msf_C | 1e-26 | 55 | 158 | 1 | 103 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.408 | 0.0 | callus| leaf| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 52550774 | 0.0 | ||||
Expression Atlas | Q56UT4 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g74410.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g74410 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY398581 | 0.0 | AY398581.1 Oryza sativa (indica cultivar-group) Myb factor protein (Myb) mRNA, complete cds, alternatively spliced. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015621159.1 | 0.0 | transcription factor MYB59 | ||||
TrEMBL | A0A0E0N8A1 | 0.0 | A0A0E0N8A1_ORYRU; Uncharacterized protein | ||||
TrEMBL | Q56UT4 | 0.0 | Q56UT4_ORYSJ; MYB transcription factor | ||||
STRING | ORUFI01G49220.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP636 | 37 | 169 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.3 | 3e-56 | myb domain protein 59 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g74410.1 |
Entrez Gene | 4324302 |