PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g66570.1
Common NameB1099D03.38, Os01g0889101, OSNPB_010889101
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 404aa    MW: 41959.4 Da    PI: 6.0882
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g66570.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.98e-05105127123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C+ C+k F ++   + H+r+H
  LOC_Os01g66570.1 105 FPCHVCSKEFGSRKAVHGHMRVH 127
                       89*******************99 PP
2zf-C2H216.81.8e-05292314123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C+ Cgk Fs+   L  H+r+H
  LOC_Os01g66570.1 292 HPCKTCGKEFSTGVALGGHMRKH 314
                       78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139120.0012104128IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.676105132IPR007087Zinc finger, C2H2
SMARTSM003550.0089105127IPR015880Zinc finger, C2H2-like
SuperFamilySSF576675.48E-9105127No hitNo description
PROSITE patternPS000280107127IPR007087Zinc finger, C2H2
SMARTSM003555245269IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280247269IPR007087Zinc finger, C2H2
SuperFamilySSF576675.48E-9287314No hitNo description
PfamPF139123.8E-10292316IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.2E-4292314IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.019292314IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.219292319IPR007087Zinc finger, C2H2
PROSITE patternPS000280294314IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MEEGEIHPGG GGGGGYYDSG SETEDDDDRY VFQSRRDDEE EEEGVNPASK RRRLEDILAE  60
TRGALPLPSP TPSSSGSEGT ISDDHGDGIA GAAAAADAPV ARVAFPCHVC SKEFGSRKAV  120
HGHMRVHQAD KDKEKEPSLH LALGWTSTGK RGANGNARAV TVAFAPMEQA VGDDDGDARA  180
IVLAPAAQPQ PQPMVVAEAA NPPNQVADDN HRLPVPAAVP YVGAAAAPAR RRARPKRNAG  240
QGGPYRCSYP GCKGEYRTHQ GLGGHVAGHI NREKQAAAAA QGGSGARPEG NHPCKTCGKE  300
FSTGVALGGH MRKHYDPKKK KKHAGLVLTL SVAPPTPAPA PSIAGAALPP AEVKADVDEH  360
EAEQVPMAPV SPPAEARGNI VRIFGVDIEK PADEEEQEGG SDV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14953KRRRL
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ5N841
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g66570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g66570
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0034310.0AP003431.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1099D03.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881238.10.0zinc finger protein ZAT1-like
TrEMBLQ5N8410.0Q5N841_ORYSJ; Os01g0889101 protein
STRINGONIVA01G44820.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139281224
Representative plantOGRP1012237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.12e-10C2H2 family protein