PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g43230.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB_related | ||||||||
Protein Properties | Length: 84aa MW: 9568.6 Da PI: 5.1502 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.5 | 8.3e-10 | 33 | 66 | 4 | 39 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkq 39 +T+eE++l + +++ G++ W++Ia +++ gRt+k+ LOC_Os01g43230.2 33 FTEEEEDLVFRMHRLVGNR-WELIAGRIP-GRTAKE 66 9******************.*********.***986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.22E-8 | 21 | 65 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.7E-11 | 32 | 66 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.64E-7 | 33 | 66 | No hit | No description |
Pfam | PF00249 | 1.1E-8 | 33 | 66 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 6.005 | 33 | 66 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 84 aa Download sequence Send to blast |
MDSSSGSQGK NSKTSDGCET KEVNNTAQNF VHFTEEEEDL VFRMHRLVGN RWELIAGRIP 60 GRTAKEQYTE GEIWCLETFP RRM* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.41242 | 1e-108 | callus| leaf| panicle| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in cotyledons, petioles, rosette leaves, hydathodes, cauline leaves, stems, pedicels and flower buds. {ECO:0000269|PubMed:22168948, ECO:0000269|PubMed:22489163}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | MYB-type transcription factor involved in trichome cell specification. Acts as a negative regulator of trichome patterning and formation. May function by suppressing the expression of GL3. {ECO:0000269|PubMed:22168948}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g43230.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g43230 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT833447 | 1e-106 | CT833447.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA029N02, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015621960.1 | 3e-57 | MYB-like transcription factor ETC3 isoform X1 | ||||
Swissprot | B3H4X8 | 1e-16 | TCL2_ARATH; MYB-like transcription factor TCL2 | ||||
TrEMBL | A0A0D9YBT1 | 2e-51 | A0A0D9YBT1_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM01G26760.1 | 3e-52 | (Oryza glumipatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30424.1 | 6e-19 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g43230.2 |
Publications ? help Back to Top | |||
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