PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LOC_Os01g09720.1

Common Name

LOC107281590, P0001B06.2, P0671B11.33

Organism

Oryza sativa subsp. japonica

Taxonomic ID

39947

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

Dof

Protein Properties

Length: 216aa MW: 22188.4 Da PI: 9.6214

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os01g09720.1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.3	3.4e-38	28	82	4	58
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrkn 58 + l+cprC+stntkfCyynny+l+qPr+fCkaCrryWt+GGalrnvPvGgg+r++ LOC_Os01g09720.1 28 EGLACPRCESTNTKFCYYNNYNLAQPRHFCKACRRYWTRGGALRNVPVGGGTRNK 82 6789*************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	2.0E-32	30	82	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.416	30	84	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	32	68	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	5.0E-23	32	80	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MEVAEGRTVA AAAAGGGGLG GGARTEAEGL ACPRCESTNT KFCYYNNYNL AQPRHFCKAC 60 RRYWTRGGAL RNVPVGGGTR NKVAPAPCTG RRKRAAHAAH AAAPPPTTTA SSAPLPLMPP 120 AVAYELPFLP PPPPLPLAAV DPDRRLLDLG GSFTSLLAPA QLHNGHFTTG FLLGTMSSAP 180 PPPPPPATST PSPAPAAHPP VSDSIWAMGW PHLSI*

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	Q9FE00

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os01g09720.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os01g09720

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP002537	0.0	AP002537.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0001B06.
GenBank	AP002746	0.0	AP002746.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0671B11.
GenBank	AP014957	0.0	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015645936.1	1e-151	dof zinc finger protein DOF3.1
TrEMBL	Q9FE00	1e-150	Q9FE00_ORYSJ; Putative DNA-binding protein Dof3
STRING	ONIVA01G06900.1	1e-149	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	2e-29	DOF zinc finger protein 1

Link Out ? help Back to Top
Phytozome	LOC_Os01g09720.1
Entrez Gene	107281590