PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g01430.1
Common NameOs01g0104200, OsJ_00034, OSNPB_010104200
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 341aa    MW: 37760 Da    PI: 6.4456
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g01430.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.75.8e-50241551128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                       lppGfrFhPtdeel+ +yL k++++ ++++  vi+evdiyk++Pw+Lp +  + +++ ewyfFs+rd+ky++g r+nra+ sgyWkatg+dk+
  LOC_Os01g01430.1  24 LPPGFRFHPTDEELLLHYLGKRAAAAPCPA-PVIAEVDIYKYNPWELPaMaVFGESDGEWYFFSPRDRKYPNGVRPNRAAGSGYWKATGTDKP 115
                       79***************************9.89***************5334455666*********************************** PP

               NAM  92 vlskkgel...vglkktLvfykgrapkgektdWvmheyrl 128
                       +  +++++    g+kk Lvfy+gr pkg+kt+W+mheyrl
  LOC_Os01g01430.1 116 ISISETQQtvlLGVKKALVFYRGRPPKGTKTSWIMHEYRL 155
                       *99844444559**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-6018199IPR003441NAC domain
PROSITE profilePS5100558.97324199IPR003441NAC domain
PfamPF023659.9E-2625155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MMTIDLQLPA AACGDHHTAA GAGLPPGFRF HPTDEELLLH YLGKRAAAAP CPAPVIAEVD  60
IYKYNPWELP AMAVFGESDG EWYFFSPRDR KYPNGVRPNR AAGSGYWKAT GTDKPISISE  120
TQQTVLLGVK KALVFYRGRP PKGTKTSWIM HEYRLANAAA SSSSSYTSNM KQLASSSSSS  180
SSSASMRLDE WVLCRIYKKK EANQQLQHYI DMMMDDDNDD EHNLQVQQQQ QQQAQSHRMP  240
RPPSISDYLL DYSDDLPPST DQTPSLHLGF TAVNEGNNKR HKTMEEYYSI SISTADMLHA  300
SSSTSNNKST QINFSSIFEP QTPAAAGHQL MSSHNDDTSI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-662420517171NO APICAL MERISTEM PROTEIN
1ut4_B1e-662420517171NO APICAL MERISTEM PROTEIN
1ut7_A1e-662420517171NO APICAL MERISTEM PROTEIN
1ut7_B1e-662420517171NO APICAL MERISTEM PROTEIN
3swm_A1e-662420520174NAC domain-containing protein 19
3swm_B1e-662420520174NAC domain-containing protein 19
3swm_C1e-662420520174NAC domain-containing protein 19
3swm_D1e-662420520174NAC domain-containing protein 19
3swp_A1e-662420520174NAC domain-containing protein 19
3swp_B1e-662420520174NAC domain-containing protein 19
3swp_C1e-662420520174NAC domain-containing protein 19
3swp_D1e-662420520174NAC domain-containing protein 19
3ulx_A1e-662420015169Stress-induced transcription factor NAC1
4dul_A1e-662420517171NAC domain-containing protein 19
4dul_B1e-662420517171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.8020.0callus| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2975958930.0
Expression AtlasA2ZNA6-
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Increased expression during grain maturation. {ECO:0000269|PubMed:17124321}.
UniprotTISSUE SPECIFICITY: Expressed in flag leaves, green spikes and peduncles. {ECO:0000269|PubMed:17124321}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene coding for a functional protein (NAM-B2) and one extra pseudogene (NAM-B1) (PubMed:17124321). {ECO:0000269|PubMed:17124321, ECO:0000269|PubMed:22278768}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g01430.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g01430
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0028180.0AP002818.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0436E04.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621004.10.0NAC transcription factor 29
SwissprotA0SPJ31e-78NAMA1_TRITD; NAC transcription factor NAM-A1
TrEMBLA2WJN80.0A2WJN8_ORYSI; Uncharacterized protein
TrEMBLA2ZNA60.0A2ZNA6_ORYSJ; Os01g0104200 protein
STRINGOS01T0104200-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123736123
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.13e-70NAC domain containing protein 47
Publications ? help Back to Top
  1. Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J
    A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat.
    Science, 2006. 314(5803): p. 1298-301
    [PMID:17124321]