PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA037706-PA
Common NameOsI_38945
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 471aa    MW: 53552.9 Da    PI: 10.0879
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA037706-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.66.1e-20895197
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                      f+kv+     +k+g +++p kfa+++gg+   s t++le+++g+++ev++   k  +  vl++GW++F++a +L+ gD++vF ++g+s f  +v 
  BGIOSGA037706-PA  8 FIKVM--ITDFKNG-VTIPAKFARNFGGQM--SGTVKLETRNGKTYEVQV--AKELNNLVLRSGWERFASAYELEKGDILVFIYSGNSHF--KVW 93
                      67777..6678887.********9999994..559***************..**********************************9999..666 PP

                      EE CS
                B3 96 vf 97
                      ++
  BGIOSGA037706-PA 94 IY 95
                      55 PP
2B343.17.4e-14222305693
                       ..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       + + + + g+l ++k++a ++ ++k+e  t++l +  ++ +W++ l  +   +  y l++GW +F + n+L+egD++vF+ ++++++  v
  BGIOSGA037706-PA 222 MDKASATDGLLAISKDYAVSYLLDKNE--TIKLCHsGRSMTWDISL--DIDTDDqYALSTGWLDFIRNNHLQEGDICVFEASKNKRG--V 305
                       5566778899***********888767..56665536678899999..4444434*************************8887666..3 PP
3B342.31.3e-1338246813100
                       TT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-SS CS
                B3  13 sgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrks 100
                       s+ ++++ k+a+++      e+ +++   + ++s++ k  ++ + + + l++GW +Fv++n++k gD+++F+l+++ ++  ++v+++rks
  BGIOSGA037706-PA 382 SRYMCFSAKYAAKYlP--R-EKNKIMSLRLPNKSYKYKAVFKINNKVHKLGGGWGKFVDDNKIKLGDICLFQLMKNkKKLMMMVHIIRKS 468
                       5667888899999942..2.333566666677888888888999999***************************999*********9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.9E-234100IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.02E-225100IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.465598IPR003340B3 DNA binding domain
CDDcd100172.00E-21696No hitNo description
PfamPF023626.2E-18894IPR003340B3 DNA binding domain
SMARTSM010192.6E-16898IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-17211309IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-18211310IPR015300DNA-binding pseudobarrel domain
CDDcd100172.06E-11216297No hitNo description
PROSITE profilePS5086312.379217312IPR003340B3 DNA binding domain
SMARTSM010195.5E-6218315IPR003340B3 DNA binding domain
PfamPF023627.4E-11223304IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.2E-17361468IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.0E-19362468IPR015300DNA-binding pseudobarrel domain
CDDcd100175.00E-14367449No hitNo description
SMARTSM010194.2E-6369468IPR003340B3 DNA binding domain
PROSITE profilePS508639.841370468IPR003340B3 DNA binding domain
PfamPF023624.2E-12381467IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MDNHGKSFIK VMITDFKNGV TIPAKFARNF GGQMSGTVKL ETRNGKTYEV QVAKELNNLV  60
LRSGWERFAS AYELEKGDIL VFIYSGNSHF KVWIYDPSAC EKELPCIITE QLPRVQQRSI  120
SHNNHTQLKR NAKSAKLYVD SSGHSKETSE TNPANSPSWK PTERVPSSEE LDEPVDLANV  180
QKATKSFYSL PRMCNMTSAQ KAEVDALEKR IKPQIPFYIT VMDKASATDG LLAISKDYAV  240
SYLLDKNETI KLCHSGRSMT WDISLDIDTD DQYALSTGWL DFIRNNHLQE GDICVFEASK  300
NKRGVALIFH PLKQSHHPKP PGCVPSTKFP RHGVSKPNYI VSRFTTLSGQ LKIKVEAKVQ  360
AIQSEIPIFV AVMRESFIRG RSRYMCFSAK YAAKYLPREK NKIMSLRLPN KSYKYKAVFK  420
INNKVHKLGG GWGKFVDDNK IKLGDICLFQ LMKNKKKLMM MVHIIRKSEF C
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878051.10.0B3 domain-containing protein LOC_Os12g40080
SwissprotQ2QMT60.0Y1208_ORYSJ; B3 domain-containing protein LOC_Os12g40080
TrEMBLB8BMS90.0B8BMS9_ORYSI; Uncharacterized protein
STRINGORGLA12G0150200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.14e-21B3 family protein